Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq27 93.3 3e-14 >seq27 Length=843962 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| ||||| ||||| || ||||| || ||||| || ||| || | || || Sbjct 479964 CACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTC 479905 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||||||||| || ||| || | |||||||| || | ||| |||||||| || || Sbjct 479904 CAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTG 479845 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| || || || | | |||| |||| |||| || |||| || || ||||| Sbjct 479844 GATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTT 479785 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| | || || ||||| ||||||||| Sbjct 479784 ACCCGTCAACGTCTTGACGAAGATTTGCATG 479754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318775731265938