Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq18 145 2e-29 seq76 91.5 3e-13 >seq18 Length=1130244 Score = 145 bits (160), Expect = 2e-29 Identities = 294/434 (68%), Gaps = 3/434 (1%) Strand=Plus/Minus Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT 268915 || ||||| ||||| | ||||| || ||||| |||||||| || | ||| || | Sbjct 427501 CTGGCGTTCTTTGCCGCGAGTGACGGGATCGTGAACGAAAACCTCGCGATGAACTTTAGC 427442 Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 | || ||||| | ||||||||| | || || ||||| |||||||| || || || || Sbjct 427441 AATGAAGTACAAGTGCCTGAAGCCCGGTGCTTCTACGGGTTCCAGATTGCCATTGAGAAC 427382 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAG 269035 ||||| || || ||||| || | || || || || || | ||| || |||||| Sbjct 427381 ATTCACTCTGAAGTGTACTCGCTCCTCATCGACACGTACATCAAGGATGCCACGGAAAAG 427322 Query 269036 AAAAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCT 269095 | | | | | | || || || |||||| || ||| | |||||| Sbjct 427321 GACCGGGTCCTGCGTGCCATTGACACGATCCCCTGTGTCCGACGCAAAGCCACCTGGGCT 427262 Query 269096 CTGAAATGGATAAACGATA-GCGCGC--CTTACGGAGAAAGGTTAGTTGCTTTTGCCGCT 269152 |||| ||| || ||| ||| || | |||| ||| | | ||||| ||||||||| Sbjct 427261 TTGAAGTGGTGCGACAATAAGCGTGCTGCCTACGCTGAACGTATCGTTGCCTTTGCCGCT 427202 Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || ||||| || ||||| |||||||| || | | ||||| ||| | ||||| |||| Sbjct 427201 GTCGAAGGCATCTTCTTCTCGGGGTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGT 427142 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272 || ||||| || || | ||||| |||||| | || | ||||||||| | |||||| Sbjct 427141 CTAATGCCGGGTTTGTCCTTCTCGAACGAACTCATTTCTCGCGACGAAGGTCTGCACTGC 427082 Query 269273 GACTTCGCTTGTTT 269286 ||||| || || || Sbjct 427081 GACTTTGCGTGCTT 427068 >seq76 Length=128956 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || || || ||||| ||||| ||||| | || | || || Sbjct 44889 AAGAACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTCAACGTGCGGCCATC 44948 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | || || || ||||| || || | || ||||| ||||| || ||||| || || Sbjct 44949 CTCCAACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTC 45008 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || ||||| || | | ||| || || || || || ||||| | Sbjct 45009 CTGAATCTTCTGC-TTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGG 45067 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || ||||| |||||||| Sbjct 45068 TCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 45101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151391304147548