Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq76 122 8e-23 seq27 120 3e-22 seq11 120 3e-22 >seq76 Length=128956 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||| || || ||||| || | || || ||||||| ||| | ||||||| Sbjct 44893 ACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTCAACGTGCGGCCATCCTCC 44952 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || ||| ||||||| | || ||||||||| |||||||| ||||| ||||| | | Sbjct 44953 AACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGA 45012 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||| | | | | ||| | | || ||||| | ||| ||||| || Sbjct 45013 ATCTTCTGCTTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTTG 45072 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || ||||||||||||||| Sbjct 45073 CCGGTGAGGGTCTTGACAAAGATCTGCATG 45102 >seq27 Length=843962 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||||||||| || ||||||||||| | ||| || ||||||| ||| | ||| || Sbjct 479964 CACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTC 479905 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || ||| ||||||| | | ||||||||| || || || ||||| ||||| | Sbjct 479904 CAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTG 479845 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || ||| ||| ||| | ||| | ||| | | || || || | |||||||||||| Sbjct 479844 GATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTT 479785 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || | || || || ||||| |||||| Sbjct 479784 ACCCGTCAACGTCTTGACGAAGATTTGCATG 479754 >seq11 Length=1510989 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||||||||| || ||||||||||| | ||| || ||||||| ||| | ||| || Sbjct 1070351 ACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCG 1070292 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||| || | ||||| || || || || ||||| ||||| | Sbjct 1070291 AGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGG 1070232 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||| |||||| | ||| | ||| | | || ||||| | ||||||||| || Sbjct 1070231 ATCTTTTGTTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTC 1070172 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || || || |||||||| Sbjct 1070171 CCAGTCAAAGTCTTGACGAAAATCTGCAT 1070143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288504649160