Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4 188 1e-43 seq3 170 3e-38 seq10 161 2e-35 seq21 147 3e-31 >seq4 Length=2763071 Score = 188 bits (208), Expect = 1e-43 Identities = 204/268 (76%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| |||||||||||||| ||||||||||| ||||| Sbjct 1610286 GCCAAGCGCCATCGCAAGGTC-CTTCGCGATAACATCCAAGGTATCACCAAGCCCGCTAT 1610228 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| ||||||| ||| | |||||||| | Sbjct 1610227 CCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTTTGATTTATGAAGAAAC 1610168 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||| | | | ||| |||| || | || || || || Sbjct 1610167 CCGCGGTGTGCTCAAGGTTTTCTTGGAAAACGTGATCCGCGACTCGGTCACGTACACGGA 1610108 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| |||||||| |||| || |||||||| || ||||| Sbjct 1610107 ACACGCTCGCCGAAAGACCGTCACGGCCATGGATGTCGTGTACGCATTGAAGCGCCAAGG 1610048 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 1610047 CCGCACTTTGTACGGTTTCGGCGGTTAA 1610020 >seq3 Length=3119476 Score = 170 bits (188), Expect = 3e-38 Identities = 196/261 (75%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || ||||||||||| |||||||||||||| || Sbjct 1068485 GCCAAGCGCCATCGCAAGGTC-CTTCGTGACAACATCCAAGGTATCACCAAGCCAGCGAT 1068543 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||||||||| || ||||||||| |||| || ||| |||||||||| | Sbjct 1068544 CCGCCGTCTGGCTCGTCGTGGCGGTGTCAAGCGTATCTCCGGCTTGATCTATGAAGAAAC 1068603 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || | | | ||| |||| ||| | || ||| || || Sbjct 1068604 CCGCGGTGTCCTCAAGGTGTTTTTGGAAAACGTGATCCGTGACTCGGTCACCTACACTGA 1068663 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||| || ||||| || || |||||||| |||| ||||| ||||| || ||||| Sbjct 1068664 ACATGCTCGTCGAAAGACCGTGACGGCCATGGATGTCGTGTATGCCTTGAAGCGCCAAGG 1068723 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 1068724 TCGCACCTTGTACGGTTTCGG 1068744 >seq10 Length=1522286 Score = 161 bits (178), Expect = 2e-35 Identities = 200/271 (74%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || ||||| || || |||||||| ||||||||||| || || Sbjct 517981 GCCAAGCGCCACCGCAAGGTC-CTTCGTGACAATATCCAAGGGATCACCAAGCCCGCCAT 518039 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || ||||| ||||| ||||||||| ||||||| ||| |||| ||||| | Sbjct 518040 CCGTCGTCTCGCCCGTCGCGGTGGTGTCAAGCGTATCTCTGGCTTGATCTACGAAGAAAC 518099 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||| | | | ||| |||| || | | ||| || || Sbjct 518100 CCGCGGTGTCCTCAAGGTGTTCTTGGAAAACGTCATCCGCGACTCGGTGACCTACACGGA 518159 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| ||||||| || ||||| || ||||| Sbjct 518160 ACACGCTCGTCGAAAGACGGTCACTGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGG 518219 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || ||||| || ||||| || Sbjct 518220 CCGCACCTTGTACGGTTTCGGCGGTTAAGCT 518250 >seq21 Length=1304294 Score = 147 bits (162), Expect = 3e-31 Identities = 195/268 (73%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || || || || ||||| || || ||||| || || ||||| Sbjct 776443 GCCAAGCGCCATCGCAAGGTC-CTCCGCGACAACATTCAGGGTATCACTAAACCTGCTAT 776385 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||||||||||||| ||||||||| ||||||| ||| |||| ||||| | Sbjct 776384 CCGCCGACTGGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGCTTGATCTACGAAGAAAC 776325 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || | | | ||| || | || | || || || || Sbjct 776324 CCGCGGTGTCCTCAAGGTGTTTTTGGAAAACGTCATTCGCGACTCGGTCACGTACACAGA 776265 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||| |||||| || ||||| |||||||| |||| || || ||||| || ||||| Sbjct 776264 ACATGCTCGACGTAAAACAGTCACAGCCATGGATGTCGTGTACGCGTTGAAGCGCCAAGG 776205 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | ||||| || || ||||| Sbjct 776204 CCGCACACTGTATGGGTTCGGTGGTTAA 776177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074760218333