Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq18 199 5e-46 >seq18 Length=1130244 Score = 199 bits (220), Expect = 5e-46 Identities = 424/627 (68%), Gaps = 11/627 (2%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||||||| || || || |||||||||||||| ||||| | | ||| |||||||| || | Sbjct 427063 ACATCAAGCACGCAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGA 427122 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | | | || |||||||| || ||||| || ||||| || ||||| ||| || || | Sbjct 427123 AGGACAAACCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGGAGCAGAACGACCCCG 427182 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33475 | |||||||| ||||| || || |||||||||| | | || | || | || | | Sbjct 427183 AGAAGAAGATGCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACGCT 427242 Query 33476 CA-TGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 | ||| |||||| |||||| ||| || | ||||| || ||||| || | Sbjct 427243 TATTGTCGCACCACTTCAAAGCCCAGGTGGCTTTGCGTCGGACACAGGGGATCGTGTCAA 427302 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 ||||| | || || ||||| | ||| || | || || ||||| | || Sbjct 427303 TGGCACGCAGGACCCGGTCCTTTTCCGTGGCATCCTTGATGTACGTGTCGATGAGGAGCG 427362 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 |||| ||| || |||||||| |||||||| ||||| || |||||||| || | || | Sbjct 427363 AGTACACTTCAGAGTGAATGTTCTCAATGGCAATCTGGAACCCGTAGAAGCACCGGGCTT 427422 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTCCGTC 33710 | | | |||||||| | | ||| |||| ||| | ||||| ||||| || ||||| Sbjct 427423 CAGGCACTTGTACTTCATTGCTAAA--GTTCATCGCGAGGTTTTCGTTCACGATCCCGTC 427480 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 ||| || ||||| ||||||| ||||| | || || | ||||| || || || Sbjct 427481 ACTCGCGGCAAAGAACGCCAGCACATGCGTGATGAAGAAACGTTCGTTGTCGGTAAGCTT 427540 Query 33771 ATTCCAAT--CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 33828 ||| | | ||| ||| | | |||| |||||| ||||||| || || Sbjct 427541 GACCCAGTCGCGTTG--ATCGTGCACCAAGTCTAGCTCTTCCGCTGTCCAGAAGCTCGCT 427598 Query 33829 TCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTA 33888 || |||||||| ||||| | ||| | ||| | |||||| ||||| | || || || Sbjct 427599 TCCGCCTTTTTGTACATCTCCCACACGTCGGCGTGTTGGATCGGGAAGAGCACGAACCTG 427658 Query 33889 TTTGGATTTGGTGCAAGGATGGGTTCC 33915 || |||||| |||||||| || ||| Sbjct 427659 TTCGGATTTTCTGCAAGGAACGGCTCC 427685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943454529960