Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 163 7e-35 >seq1 Length=2817317 Score = 163 bits (180), Expect = 7e-35 Identities = 523/812 (64%), Gaps = 51/812 (6%) Strand=Plus/Minus Query 363543 TGTA-TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGT 363601 |||| || || ||||| || || || ||| |||||| || || | || || | | Sbjct 1825666 TGTACTTTACCCACGCAACACCCACGTTGTTCAATGCCGGCACGCCGCGCCCTCAACTCT 1825607 Query 363602 CTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTA 363661 | || |||||| | || ||||| ||||| || || || || || | |||||| | | Sbjct 1825606 CGTCGTGCTTTTTGCTGTCCATGAAAGACGACTCGATTGAAGGCATTTACGACACATTGA 1825547 Query 363662 AGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTC 363721 | || || || ||||||||| || || ||||| ||||| |||||||| | | Sbjct 1825546 AAAACTGCGCGTGCATTTCCAAGTGGGCTGGTGGAATCGGTGTGAACATCCACAACATCC 1825487 Query 363722 GTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGC 363781 | || |||||| |||||||| || || || | ||||| ||| | ||||||||| Sbjct 1825486 GCGCCACGAACAGCTACATTCGAGGAACGAACGGGTCTTCGAACGGGATCATTCCCATGC 1825427 Query 363782 TTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGG 363841 |||| ||||| || | || || | || |||||||| || || |||||||| || ||| Sbjct 1825426 TTCGCGTGTTCAACGACACGGCCCGTTATGTCGACCAAGGCGGTGGAAAGCGAAAGGGGT 1825367 Query 363842 CGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTT-----GAGT---------- 363886 ||||||| ||||| | || ||| || || || |||||| || | Sbjct 1825366 CGTTTGCCATGTACTTGGAACCTTGGCACGCTGACATTTTTGGTACGACTCCCCATCCAC 1825307 Query 363887 ----TTCTT-----------------------GAGCTCCGGAAAAACACGGGAAAAGAGG 363919 ||||| |||||| ||||||| || || ||| Sbjct 1825306 GTTGTTCTTAACATTTTGCATTAGAATTCTTGGAGCTCAAGAAAAACCACGGCAACGAGC 1825247 Query 363920 AATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCG 363979 || || || || |||||||||| | ||| | | ||| || |||||||||| Sbjct 1825246 TCCACCGCGCCCGCGACTTGTTCTATGCCATGTGGATCCCGGACTTGTTCATGAAGCGCG 1825187 Query 363980 T-GGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTC-CGA 364037 | | | || ||| ||| | || ||||| | ||| | || | ||| | ||| Sbjct 1825186 TCGAATCCAACGGCGAA-TGGAGTTTGTTCTGCCCCAATGAA-GCCCCTGGCTTGCACGA 1825129 Query 364038 TGTATGGGGTGACGACTATGTTGCTCTAT--ACGAAAAGTATGAATCGGAGGGAAAGGCT 364095 ||||| ||| | | ||||| | |||||| || || ||| || ||| Sbjct 1825128 GTGCTGGGGCTCCGAGTTCGACGCTCTCTTCACGAAA--TACGAGAAGGAAGGGCGTGCT 1825071 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 || || || || || ||| | || |||||||||||| |||| ||||| | || ||| Sbjct 1825070 CGAAAAACCATCAAGGCGCAGCAACTGTGGTTTGCCATCTTGGAATCGCAAGTAGAAACA 1825011 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 || || || || ||||||||||| ||| |||||||| ||||||||||||| ||| |||| Sbjct 1825010 GGCACCCCGTACATGTTGTACAAGGATGCGTGCAACGGCAAGTCCAACCAACAGAACCTC 1824951 Query 364216 GGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 || || || | ||||||| | || ||| || || || ||||| ||||| Sbjct 1824950 GGCACGATCAAATCGAGCAACTTGTGCTGCGAAATCATCGAGTACACGAGCAAAGACGAA 1824891 Query 364276 ACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 ||||| || ||| | || || |||||||| Sbjct 1824890 GTCGCCGTGTGCAACTTGGCATCCATCGCGCT 1824859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303345567676142