Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq76 136 4e-27 seq11 122 8e-23 seq10 84.2 2e-11 >seq76 Length=128956 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || || || ||||| | |||||||||||| || || ||||| |||||| Sbjct 44875 CCACCGCGGAGGCGAAGAACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTC 44934 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | ||||||||| || |||| | || ||||| |||||||| Sbjct 44935 AACGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGA 44994 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || |||||||||| | || | | |||| | ||| | | Sbjct 44995 ATCCCTTCCTTGTCCTGAATCTTCTGCTTGACATTGTCAATCGAGTCGGACGGCTCCACG 45054 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| |||| ||| || ||||| || || || || || ||||||||| Sbjct 45055 TCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 45102 >seq11 Length=1510989 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| || || || || || | ||||| |||||||| |||||||| |||||| Sbjct 1070369 CCCCCACGCAGGCGGAGAACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTC 1070310 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||||||||| || |||| || ||||||||||| || ||| Sbjct 1070309 AACGTGCGGCCATCTTCGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGG 1070250 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || || |||| | || | | || | | ||| | | Sbjct 1070249 ATGCCTTCCTTGTCTTGGATCTTTTGTTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 1070190 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | ||| || |||||||||||||| Sbjct 1070189 TCCAGCGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 1070143 >seq10 Length=1522286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||||||||| | || || || || || | |||||| ||||| || |||||||| |||| Sbjct 1385718 AGCCACCGCGAAGGCGAAGGACCAAGTGCAAGGTCGATTCCTTCTGGATGTTGTAGTCGC 1385777 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTG 131114 ||| ||||| ||| || ||||||||||| || |||| || ||||| Sbjct 1385778 TCAACGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATCAATCGCTG 1385826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472009962023040