Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq18 158 2e-33 >seq18 Length=1130244 Score = 158 bits (174), Expect = 2e-33 Identities = 417/628 (66%), Gaps = 13/628 (2%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||||||| || || || |||||||| ||||| ||||| | | ||| | |||||| || | Sbjct 427063 ACATCAAGCACGCAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGA 427122 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | | | || |||||||| || ||||| || ||||| || ||||| ||| || || || Sbjct 427123 AGGACAAACCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGGA-GCAGAACGACCCC 427181 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || ||||| || ||||| || || |||||||||| | | || | || | || | Sbjct 427182 GAGAAGAAGATGCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACGC 427241 Query 32832 TCAT-GTATC--CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | || || | ||||| |||||| ||| || | ||||| || || || || Sbjct 427242 TTATTGTCGCACCACTTCAAAGCCCAGGTGGCTTTGCGTCGGACACAGGGGATCGTGTCA 427301 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || ||| | || || ||||| | ||| || | || || || || | || Sbjct 427302 ATGGCACGCAGGACCCGGTCCTTTTCCGTGGCATCCTTGATGTACGTGTCGATGAGGAGC 427361 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 |||| ||| || |||||||| |||||||| || || || ||||||||||| | || Sbjct 427362 GAGTACACTTCAGAGTGAATGTTCTCAATGGCAATCTGGAACCCGTAGAAGCACCGGGCT 427421 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGT 33066 || | | |||||||| | | ||| |||| || | ||||| ||||| || |||| Sbjct 427422 TCAGGCACTTGTACTTCATTGCTAAA--GTTCATCGCGAGGTTTTCGTTCACGATCCCGT 427479 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 33126 |||| || ||||| ||||||| ||||| | || || | ||||| || || | Sbjct 427480 CACTCGCGGCAAAGAACGCCAGCACATGCGTGATGAAGAAACGTTCGTTGTCGGTAAGCT 427539 Query 33127 TATTCCAAT--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 33184 | ||| | | ||| ||| | | || | |||||| ||||||| || || Sbjct 427540 TGACCCAGTCGCGTTG--ATCGTGCACCAAGTCTAGCTCTTCCGCTGTCCAGAAGCTCGC 427597 Query 33185 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 || |||||||| ||||| | ||| | ||| | ||| || || || | || || || Sbjct 427598 TTCCGCCTTTTTGTACATCTCCCACACGTCGGCGTGTTGGATCGGGAAGAGCACGAACCT 427657 Query 33245 ATTTGGATTTTTTGCAAGGATTGGTTCC 33272 || ||||||| |||||||| || ||| Sbjct 427658 GTTCGGATTTTCTGCAAGGAACGGCTCC 427685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628190287600