Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq27 145 7e-30 seq11 125 6e-24 seq76 120 3e-22 >seq27 Length=843962 Score = 145 bits (160), Expect = 7e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| || || ||||| ||||| |||||| ||||||| | || ||||| | Sbjct 479752 ACCATGCAAATCTTCGTCAAGACGTTGACGGGTAAAACCATCACGTTGGATGTGGAACCA 479811 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||| | ||||| |||||||||| ||| ||||| ||||| || || ||||| Sbjct 479812 TCCGACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCCCCTGAT 479871 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||||||||| ||||| ||||||| ||||| || |||| ||| Sbjct 479872 CAGCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACGTTGAGCGACTAC 479931 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || | || || ||||| Sbjct 479932 AACATCCAAAAGGAATCGACCTTGCACTTGGTGCT 479966 >seq11 Length=1510989 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | || |||||| | || Sbjct 1070143 ATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGCTGGACGTGGAGCCTTCG 1070202 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | ||||| | || ||||| ||| ||||| ||||| || || |||||||| Sbjct 1070203 GACTCGATCGACAACGTCAAACAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 1070262 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | ||||||| ||||| || |||| ||||| Sbjct 1070263 CAGCGCTTGATCTTTGCGGGCAAGCAGCTCGAAGATGGCCGCACGTTGAGCGACTACAAC 1070322 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| ||| | || || || || Sbjct 1070323 ATCCAAAAGGAATCGACGTTGCACTTGGTTCT 1070354 >seq76 Length=128956 Score = 120 bits (132), Expect = 3e-22 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||| ||||| | ||||| || |||| || |||| |||||| || Sbjct 45104 ACCATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATTACGCTCGACGTGGAGCCG 45045 Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || ||| | || || || || ||||| || || ||||| ||||||||||| || | Sbjct 45044 TCCGACTCGATTGA--CAATGTCAAGCAGAAGATTCAGGACAAGGAAGGGATTCCTCCGG 44987 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || || || | || ||||||||||| || || || |||| ||||| || |||| | Sbjct 44986 ATCAGCAACGACTCATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGCACGTTGAGCGACT 44927 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| || || || || || || ||||| || || Sbjct 44926 ACAATATCCAGAAGGAGTCGACCCTGCATTTGGTTCT 44890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325459750015