Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq18 125 8e-24 >seq18 Length=1130244 Score = 125 bits (138), Expect = 8e-24 Identities = 415/634 (65%), Gaps = 20/634 (3%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 |||||| ||||||||||||||| || | ||||||||| || || || | || || Sbjct 427061 GTACATCAAGCACGCAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGA 427120 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-C 93200 ||| | ||||| || | || ||||| ||||||||||| || | || |||| ||| | | Sbjct 427121 GAAGGACAAACCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGA-TGGAGCAGAACGACC 427179 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || ||||| || || ||||| || || |||||||| || | || Sbjct 427180 CCGAGAAGAAGATGCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCAC 427239 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 ||| || | ||| || |||||||| |||||| | ||| || | || | Sbjct 427240 GCTTATTGTCGCACCACTTCAAAGCCCAGGTGGCTTTGCGTCGGACACAGGGGATCGTGT 427299 Query 93321 CGATAGCGTTAAATAGGTAATC--TCGCTCGTCC---GAATCTCGTATGTATGTATCGAT 93375 | || || | ||| | | || || ||| | ||| ||||| || ||||| Sbjct 427300 CAATGGC---ACGCAGG-ACCCGGTC-CTTTTCCGTGGCATCCTTGATGTACGTGTCGAT 427354 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 | || || |||| |||||| || | ||||| || ||||| ||||| |||||||| || Sbjct 427355 GAGGAGCGAGTACACTTCAGAGTGAATGTTCTCAATGGCAATCTGGAACCCGTAGAAGCA 427414 Query 93436 TCTAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTA 93494 | ||||| | | || ||||| ||| ||| | || |||| ||||| || || | Sbjct 427415 CCGGGCTTCAGGCACTTGTACTTCATTGCTAAAGT-TCATCGCGAGGTTTTCGTTCACGA 427473 Query 93495 TACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT---AAAATGTTTCTCATCAT 93551 | || || || ||||| || |||| | |||| | || ||| || || | | Sbjct 427474 TCCCGTCACTCGCGGCAAAGAACGCCAGCACATGCGTGATGAAGAAACGT---TCGTTGT 427530 Query 93552 CTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAA 93611 | ||||||| |||| ||| | |||| | | || | ||||| | ||||| | Sbjct 427531 CGGTAAGCTTGACCCAGTCGCGTTGATCGTGCACCAAGTCTAGCTCTTCCGCTGTCCAGA 427590 Query 93612 ACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGA 93671 | ||||| || ||||||||||| ||||| | ||| | ||| || || || | | Sbjct 427591 AGCTCGCTTCCGCCTTTTTGTACATCTCCCACACGTCGGCGTGTTGGATCGGGAAGAGCA 427650 Query 93672 CAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 | || | || || || ||| || |||||||| Sbjct 427651 CGAACCTGTTCGGATTTTCTGCAAGGAACGGCTC 427684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857451874440