Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq76 129 5e-25 seq27 123 2e-23 seq11 113 4e-20 seq18 82.4 6e-11 >seq76 Length=128956 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || | || || || ||||| | || Sbjct 45101 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATTACGCTCGACGTGGAGCCGTCC 45042 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| || |||| || || ||||| |||||||| || ||||| || ||||| Sbjct 45041 GACTCGATTGACAATGTCAAGCAGAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 44982 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||||||||| ||||| |||||| |||||| | ||| ||||| Sbjct 44981 CAACGACTCATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGCACGTTGAGCGACTACAAT 44922 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 || || || || || ||| | ||||| ||| | || | ||||| |||| Sbjct 44921 ATCCAGAAGGAGTCGACCCTGCATTTGGTTCTTCGCCTCCGCGGTGGTT 44873 >seq27 Length=843962 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || |||||||| |||| | || |||||| | || Sbjct 479755 ATGCAAATCTTCGTCAAGACGTTGACGGGTAAAACCATCACGTTGGATGTGGAACCATCC 479814 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || ||||| || || |||||||| || || || || ||||| Sbjct 479815 GACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCAG 479874 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||||||||| || || || ||| |||||| | ||| |||||| Sbjct 479875 CAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACGTTGAGCGACTACAAC 479934 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| ||| | || || || | || |||| || ||| Sbjct 479935 ATCCAAAAGGAATCGACCTTGCACTTGGTGCTCCGCCTGCGTGGTGGT 479982 >seq11 Length=1510989 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||| || || ||||| || || || || |||| || || ||||| | Sbjct 1070139 AAATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGCTGGACGTGGAGCC 1070198 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || | | ||| | |||||||||| || ||||||||||| || || || || || Sbjct 1070199 TTCGGACTCGATCGACAACGTCAAACAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGA 1070258 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || || | || ||||| ||||| ||| | || ||| |||||| | ||| || Sbjct 1070259 CCAGCAGCGCTTGATCTTTGCGGGCAAGCAGCTCGAAGATGGCCGCACGTTGAGCGACTA 1070318 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| ||||| ||||| || | || || ||| | || |||| || ||| Sbjct 1070319 CAACATCCAAAAGGAATCGACGTTGCACTTGGTTCTCCGCCTGCGTGGGGGT 1070370 >seq18 Length=1130244 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/155 (73%), Gaps = 5/155 (3%) Strand=Plus/Minus Query 117069 GCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCA-GTTTTGCTGCCATATTTTTTAT 117127 || || ||| |||||||||||| ||||| || || ||| |||| |||| || | | Sbjct 427213 GCCTTTGCCGCTGTCGAAGGCATCTTCTTCTCGGGGTCGTTCTGCT-CCATCTTCTGGCT 427155 Query 117128 CAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGA 117187 ||||| |||||||||||||||| | | || |||||| | || || || ||||| Sbjct 427154 CAAGAAGCGAGGTCTAATGCCGGGTTTGTCCTTCTCGAACGAACTCATTTCTCGCGACGA 427095 Query 117188 AGGTTTACACACCGATTTTGCGTGC---ATGTACT 117219 |||| | ||| ||| ||||||||| ||||||| Sbjct 427094 AGGTCTGCACTGCGACTTTGCGTGCTTGATGTACT 427060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725539475765