Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 102 2e-16 >seq3 Length=3119476 Score = 102 bits (112), Expect = 2e-16 Identities = 270/409 (66%), Gaps = 4/409 (1%) Strand=Plus/Plus Query 218648 AAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACG 218707 |||| |||||||| || || | | |||||| | || || ||| | |||||||| | Sbjct 1836956 AAGAGATTAAGGTTGCGCAACTGGCCGGTTATATTTCAGAGCATTCGGCATACCATCATG 1837015 Query 218708 GTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACA 218767 | || || ||||| || | || | ||||||||||| | | || || || |||| Sbjct 1837016 GCGAAGTGAACCTGCACGGCACAATCATTGGCATGGCACAAAATTTCGTTGGAAGCAACA 1837075 Query 218768 ACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATA 218827 |||| |||||| || |||||| || ||||| || |||||||| |||| || || ||| Sbjct 1837076 ACATCAACTTGTTGTCCCCCAATGGCCAGTTCGGGACTCGTCTAATGGGAGGCAAAGATG 1837135 Query 218828 GTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATC 218887 || ||| | || | ||||| || || | |||| ||||||| || ||| ||| Sbjct 1837136 CAGCCAGTGCTCGTTACGTTTTTACGAACGTGGAGTCCGTCACGCGCCTCGTCTTCCATC 1837195 Query 218888 AGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGT 218947 || || || | || || | || || || || || ||||| || | | Sbjct 1837196 CACTGGACGACCCAATCTTGAACTACTTGGAAGATGAAGGCCAATCAATTGAACCGCAAT 1837255 Query 218948 GGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGT 219007 |||| |||| | |||||| | | || || || ||| | ||||| || || |||| Sbjct 1837256 GGTACATGCCGACAATTCCGATGTCCCTTGTCAACGGTAGTGACGGTATTGGTACGGGGT 1837315 Query 219008 --TCAGTACTGACATTCCTTCTTACAATCCCAAGGACATCATTGACAAC 219054 || || || ||| || ||||||||| |||||| ||||| ||| Sbjct 1837316 GGTC-GT-GTGGCATCCCCAACTACAATCCCTTGGACATAATTGAGAAC 1837362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830465634521