Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq11 114 1e-20 seq76 104 2e-17 >seq11 Length=1510989 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | ||| || || | ||| ||||| ||||| |||||||| ||||| Sbjct 1070370 ACCCCCACGCAGGCGGAGAACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCT 1070311 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| || || || || || |||| | ||||| ||||| || || Sbjct 1070310 CAACGTGCGGCCATCTTCGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGG 1070251 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||||| ||||| ||||||||||| | | || | | ||| | | || || Sbjct 1070250 GATGCCTTCCTTGTCTTGGATCTTTTGTTTGACGTTGTCGATCGAGTCCGAAGGCTCCAC 1070191 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || | || || || |||| ||| || || ||||||||||| Sbjct 1070190 GTCCAGCGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 1070143 >seq76 Length=128956 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || || | | ||| ||||| | || || || || || || ||||| ||||| Sbjct 44874 ACCACCGCGGAGGCGAAGAACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCT 44933 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || ||| || | || || || || ||||||| || || || |||||||| Sbjct 44934 CAACGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGG 44993 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| |||||| || || | | |||| | ||||| | || || Sbjct 44994 AATCCCTTCCTTGTCCTGAATCTTCTGCTTGACATTGTCAATCGAGTCGGACGGCTCCAC 45053 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 ||| | || | || |||||||| || || || ||||| |||||||||| Sbjct 45054 GTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGG 45103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420131937093372