Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq18 239 8e-58 >seq18 Length=1130244 Score = 239 bits (264), Expect = 8e-58 Identities = 497/729 (68%), Gaps = 21/729 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||| ||||| ||||| |||||| || || || || ||||| || | | || | Sbjct 427501 CTGGCGTTCTTTGCCGCGAGTGACGGGATCGTGAACGAAAACCTCGCGATGAACTTTAGC 427442 Query 42483 AAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 || || || || || | | || || || ||||||||||| |||||||| ||||| ||||| Sbjct 427441 AATGAAGTACAAGTGCCT-GAAGCCCGGTGCTTCTACGGGTTCCAGATTGCCATTGAGAA 427383 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | | |||||||| |||||| | || || ||||||||||| |||| || || Sbjct 427382 CATTCACTCTGAAGTGTACTCGCTCCTCATCGACACGTACATCAAGGATGCCACGGAAAA 427323 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG-AAGGCGGACTGGG 42660 || || | | ||||| || ||||| ||||| || || | || || ||||| Sbjct 427322 GGACCGGGTCCTGCGTGCCATTGACACGATCCCCTGTGTCC-GACGCAAAGCCACCTGGG 427264 Query 42661 CGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | | || ||| ||| | | || | | || || | | || |||||| ||| Sbjct 427263 CTTTGAAGTGGTGCGACAATAAGCGTGCTGCCTACGCTGAACGTATCGTTGCCTTTGCCG 427204 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AG 42779 | ||||| ||||||||||||||||| | ||| ||||||||||||||||||| || || Sbjct 427203 CTGTCGAAGGCATCTTCTTCTCGGGGTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGAG 427144 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 || | ||||| || | ||||||||||||||||||| | ||||| || ||||| Sbjct 427143 GTCTA-ATGCCGGGTTTGTCCTTCTCGAACGAACTCATTTCTCGCGACGAAGGTCTGCAC 427085 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899 | |||||||| ||| | ||| ||||| | | ||| ||||| || | |||| Sbjct 427084 TGCGACTTTGCGTGCTTGATGTACTCGAAGCTCGTCA---ACAAGTTGTCCGACCAGCGC 427028 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959 ||| | ||| || || ||||| | ||| |||||| |||| ||| || ||| Sbjct 427027 ATCCACGAGATCGTCGGCGACGCCGTCGCGATTGAGAAGCAGTTTGTCAGTGAGAGCCTG 426968 Query 42960 CCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019 |||||| || | ||||||||| |||||||||| ||||||| ||| | ||| Sbjct 426967 CCCGTGGAGCTCATTGGCATGAACTCGTCCCTCATGTGCGAGTACATTGAGTTCTGCGCG 426908 Query 43020 GACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTA-CAACACGC-----CGTGCCCC 43073 || | ||||| | | | ||| || || | | | |||| | ||| Sbjct 426907 GATCGCCTCCT---CGA---AGCCCTCGGCGCCCCCAAGCTGTACGCGGCCAAGAACCCG 426854 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 ||||||| ||||| | |||||| | |||||||||||||||||||||||||||||||| Sbjct 426853 TTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 426794 Query 43134 GCCGACTAC 43142 | ||| ||| Sbjct 426793 GGCGAGTAC 426785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333522160560