Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq27 120 7e-22 seq11 116 9e-21 seq76 113 1e-19 >seq27 Length=843962 Score = 120 bits (132), Expect = 7e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || |||||| | |||||| || ||||| ||||| || || || || Sbjct 479946 TTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCCAATTGCTTGCCGGCAAA 479887 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGT 288400 ||| || || || ||| | ||||| ||||| || |||||||| ||| |||| ||||| Sbjct 479886 GATGAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTTGCTT-CACGT 479828 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || || ||| | ||| || || | |||||| || || || |||| ||||||| Sbjct 479827 TGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTACCCGTCAACGTCTTGA 479768 Query 288461 CGAATATCTGCAT 288473 |||| || ||||| Sbjct 479767 CGAAGATTTGCAT 479755 >seq11 Length=1510989 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || |||||| | |||||| || ||||| | || || || || || Sbjct 1070334 TTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCGAGCTGCTTGCCCGCAAA 1070275 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||||| || | ||||| ||||| || || ||||| || ||| ||||| Sbjct 1070274 GATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGTTTGACGTT 1070215 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || || | || || || |||||||| |||||||| |||| ||||||||| Sbjct 1070214 GTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTCCCAGTCAAAGTCTTGAC 1070155 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 1070154 GAAAATCTGCAT 1070143 >seq76 Length=128956 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| || | ||| | || || || |||||||| |||||| Sbjct 44875 CCACCGCGGAGGCGAAGAACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTC 44934 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||| || || || || || || || || ||||| || || || ||| || Sbjct 44935 AACGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGA 44994 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || ||| || || || || || || ||| || || || Sbjct 44995 ATCCCTTCCTTGTCCTGAATCTTCTGCTTGACATTGTCAATCGAGTCGGACGGCTCCACG 45054 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || ||||| ||||| || |||||||| || |||||||| Sbjct 45055 TCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 45101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647130011118