Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq97 111 3e-19 seq4 111 3e-19 >seq97 Length=16286 Score = 111 bits (122), Expect = 3e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 334179 GAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCC 334238 || ||||||||||| | ||||||||| |||| || ||||||| || || || ||||| Sbjct 6143 GACGGGAACCCTTCCAACTGACCGTTTGCAATCGCACGCATCAACGTCGACTTGCCCGCG 6202 Query 334239 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTC 334298 ||||| ||||| |||| |||||| |||| || ||||| | || |||| ||||| Sbjct 6203 CCGTTGGGCCCGCACAAACCGTACCGGTGCCCCTTTTTCAGCTGCAAACGCGCGTTGTTG 6262 Query 334299 AGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACA 334344 || | ||| | ||||| || |||| |||||||| || || |||| Sbjct 6263 AGCAAAATCATACCACCGTACGCCAACGAAAATTCGCAGTCGCACA 6308 Score = 111 bits (122), Expect = 3e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 334179 GAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCC 334238 || ||||||||||| | ||||||||| |||| || ||||||| || || || ||||| Sbjct 11659 GACGGGAACCCTTCCAACTGACCGTTTGCAATCGCACGCATCAACGTCGACTTGCCCGCG 11600 Query 334239 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTC 334298 ||||| ||||| |||| |||||| |||| || ||||| | || |||| ||||| Sbjct 11599 CCGTTGGGCCCGCACAAACCGTACCGGTGCCCCTTTTTCAGCTGCAAACGCGCGTTGTTG 11540 Query 334299 AGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACA 334344 || | ||| | ||||| || |||| |||||||| || || |||| Sbjct 11539 AGCAAAATCATACCACCGTACGCCAACGAAAATTCGCAGTCGCACA 11494 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||||||||| || ||||||| ||||| |||||||| | |||| ||| | Sbjct 5282 TCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGGTTCGCCGTCAAGTCCAAG 5341 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || || || ||||| ||||| || ||||| |||||||| |||| |||||| || ||| Sbjct 5342 TGCTCTTCAATGTGATGGAACGCGTGCTGCGCCACGTACGCAAAACGCATCGACGGGTGC 5401 Query 333435 TTCCA 333439 ||||| Sbjct 5402 TTCCA 5406 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||||||||| || ||||||| ||||| |||||||| | |||| ||| | Sbjct 12520 TCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGGTTCGCCGTCAAGTCCAAG 12461 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || || || ||||| ||||| || ||||| |||||||| |||| |||||| || ||| Sbjct 12460 TGCTCTTCAATGTGATGGAACGCGTGCTGCGCCACGTACGCAAAACGCATCGACGGGTGC 12401 Query 333435 TTCCA 333439 ||||| Sbjct 12400 TTCCA 12396 >seq4 Length=2763071 Score = 111 bits (122), Expect = 3e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 334179 GAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCC 334238 || ||||||||||| | ||||||||| |||| || ||||||| || || || ||||| Sbjct 1861152 GACGGGAACCCTTCCAACTGACCGTTTGCAATCGCACGCATCAACGTCGACTTGCCCGCG 1861093 Query 334239 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTC 334298 ||||| ||||| |||| |||||| |||| || ||||| | || |||| ||||| Sbjct 1861092 CCGTTGGGCCCGCACAAACCGTACCGGTGCCCCTTTTTCAGCTGCAAACGCGCGTTGTTG 1861033 Query 334299 AGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACA 334344 || | ||| | ||||| || |||| |||||||| || || |||| Sbjct 1861032 AGCAAAATCATACCACCGTACGCCAACGAAAATTCGCAGTCGCACA 1860987 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||||||||| || ||||||| ||||| |||||||| | |||| ||| | Sbjct 1862013 TCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGGTTCGCCGTCAAGTCCAAG 1861954 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || || || ||||| ||||| || ||||| |||||||| |||| |||||| || ||| Sbjct 1861953 TGCTCTTCAATGTGATGGAACGCGTGCTGCGCCACGTACGCAAAACGCATCGACGGGTGC 1861894 Query 333435 TTCCA 333439 ||||| Sbjct 1861893 TTCCA 1861889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873203157350