Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq18 150 2e-31 seq1 129 7e-25 seq26 87.8 2e-12 >seq18 Length=1130244 Score = 150 bits (166), Expect = 2e-31 Identities = 562/869 (65%), Gaps = 38/869 (4%) Strand=Plus/Plus Query 125753 TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTC 125812 |||| ||| || || || ||||||||||| ||||| ||||| || | | ||| | Sbjct 426780 TTGCTGTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGCGAGATCATG 426839 Query 125813 TCCATAAAATCAAATGGGTTCTTTGAGT--TCCAAATTGTTGGCACCCCAATCTGTTTGA 125870 ||||| | || || |||||||| | | || ||| ||| || || | || Sbjct 426840 TCCATCCAGTCGAACGGGTTCTTGGCCGCGTACAGCTTGGGGGCGCCGAGGGCT--TCGA 426897 Query 125871 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 125930 |||| ||||||| | | ||||||||||||| |||| |||||||| || |||| Sbjct 426898 GGAGGCGATCCGCGCAGAACTCAATGTACTCGCACATGAGGGACGAGTTCATGCCAATGA 426957 Query 125931 GGTTACATGGGAGCGCGTCCAA-GATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACG 125989 | | || ||| || || || ||| ||||||||| | ||||| || | ||| Sbjct 426958 GCTC-CACGGGCAGGCTCTCACTGACAAACTGCTTCTCAATCGCGACGGCGTCGCCGACG 427016 Query 125990 ATGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAG-TTC------ 126042 || |||| ||| | | |||| | ||| | |||| ||| ||| Sbjct 427017 ATCTCGTGGATG--------CGCTGGTC----GGACAACTTGTTGACGAGCTTCGAGTAC 427064 Query 126043 --CACG---GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAG 126097 || | ||||| || ||| ||||| ||||| || || |||||||| ||||||||| Sbjct 427065 ATCAAGCACGCAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGAAG 427124 Query 126098 CACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAG 126157 ||| || ||||| ||||| |||||||| | |||||| || | || || || |||||| Sbjct 427125 GACAAACCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGGAGCAGAACGACCCCGAG 427184 Query 126158 AAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGCGACTT 126216 |||||||| || || ||| || || |||| || ||| ||||| ||| ||| || ||| Sbjct 427185 AAGAAGATGCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACG-CTT 427243 Query 126217 TGTGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTC-GATACACGGGACGGTCTGGA 126275 |||| ||||||||| ||||| | | |||| || || ||| |||| || | | Sbjct 427244 ATTGTCGCACCACTTCAAAGCCCA-GGTGGCTTTGCGTCGGACACAGGGGATCGTGTCAA 427302 Query 126276 TCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTG 126335 | || | || | |||||| | | ||| ||||||||| | || ||||| | Sbjct 427303 TGGCACGCAGGACCCGGTCCTTTTCCGTGGCATCCTTGATGTACGTGTCGATGAGGAGCG 427362 Query 126336 AATATGTTTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGC 126393 | || ||| ||| | | ||| |||||| ||| || ||||||| | || || Sbjct 427363 AGTACACTTCAGAGTGAATGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCACCGGGC 427420 Query 126394 TTCGCTTATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATC 126453 ||| | ||||| |||| | ||| || | || || || || || || || Sbjct 427421 TTCAGGCACTTGTACTTCATTGCTAAAGTTCATCGCGAGGTTTTCGTTCACGATCCCGTC 427480 Query 126454 GGACCCAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGT 126513 | | ||||| |||||||| | || | | ||||| |||| || ||| | || | Sbjct 427481 ACTCGCGGCAAAGAACGCCAGCACATGCGTGATGAAGAAACGTTCGTTGTCGGTAAGCTT 427540 Query 126514 CTTCCAGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTG 126573 ||||||| |||| | | | |||| ||| ||||| ||||| |||| || Sbjct 427541 GACCCAGTCGCGTTGATCGTGCACCAAGTCTAGCTCTTCCGCTGTCCAGAAGCTCGCTTC 427600 Query 126574 AGCCTTCTTATAGAGTTCCCAAAGGTGGG 126602 ||||| || || | ||||| | || || Sbjct 427601 CGCCTTTTTGTACATCTCCCACACGTCGG 427629 >seq1 Length=2817317 Score = 129 bits (142), Expect = 7e-25 Identities = 736/1174 (63%), Gaps = 69/1174 (6%) Strand=Plus/Plus Query 114199 GGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATC 114258 ||| ||||| || || |||||||| || | |||| |||||| | | || || Sbjct 1824597 GGCGGCGTGGTAGATCGTCTCAAAGATCTGTTGGTTCAACAGCTTGGCTTGGGGCGACTC 1824656 Query 114259 AAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGG 114318 ||||||| || | ||||| ||||||| || ||||||||||| | ||| || || Sbjct 1824657 GAACGCGAATCCCATGAGGATAAACGCATCCGCCAGCCCTTGGACACCAATGCCGATCGG 1824716 Query 114319 GCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAAC 114378 ||| || | ||| || || || || || | ||| || | || ||||| || Sbjct 1824717 GCGGTGCCGCATGTTGCTGTTGCGCGCTTCTTCGATGGGGTAGTAGTTGACGTCGATGAC 1824776 Query 114379 CCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACT 114438 | | || | || | ||||| ||||| | ||| | || | | || | | || || Sbjct 1824777 CTTGTTCAAGTTGGTCGTGACCACCTTGGCGATCTTGTGCAAGTGTTGGAAGTCGAACAC 1824836 Query 114439 GCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 114498 || |||| ||| |||| | || ||||| || |||| || ||||| | | Sbjct 1824837 GCCGTTCTCA------ACAAACTTGGAGAGCGCGATGGATGCCAAGTTGCACACGGCGAC 1824890 Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTC---TTAATGGT 114555 || || || |||||||| || ||||| ||||| || ||| || || || Sbjct 1824891 TTCGTCTTTGCTCGTGTACTCGATGATTTCGCAGCACAAGTTG---CTCGATTTGATCGT 1824947 Query 114556 GCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGT 114615 ||| | ||||| ||| || ||||| ||| |||||||||||||| | |||||| || || Sbjct 1824948 GCCGAGGTTCTGTTGGTTGGACTTGCCGTTGCACGCATCCTTGTACAACATGTACGGGGT 1825007 Query 114616 CCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT-CGGCGGCTGGCACAGTGG 114674 || || || ||| || | | || || ||| | | | ||| || | ||| Sbjct 1825008 GCCTGTTTCTACTTGCGATTCCAAGATGGCAAACCACAGTTGCTGCGCCTTGA----TGG 1825063 Query 114675 CGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCA 114731 || || ||||| |||| |||||| || ||| |||| || || ||||| ||| Sbjct 1825064 TTTTTCGAGCACGCCCTTCCTTCTCGTATTTCGTGAAGAGAGCGTCGAACTCGGAGCCCC 1825123 Query 114732 CGGCCTC-TGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCC 114790 | ||| || |||| || || | || |||||||| | | ||||| || Sbjct 1825124 AGCACTCGTGCAAGCCAGGG-GCTTCATTGGGGCAGAACAAACTCCATTCGCCGTTGGAT 1825182 Query 114791 TCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCG- 114849 || || ||||||||||| | ||| |||||||| | || |||| | || || ||| Sbjct 1825183 TCGACGCGCTTCATGAACAAGTCCGGGATCCACATGGCATAGAACAAGTCGCGGGCGCGG 1825242 Query 114850 ---AGCT---------------TCTTCATCCCCCTGA-TTGAGACGCAACTCC------A 114884 |||| |||| | | || || || | |||| | Sbjct 1825243 TGGAGCTCGTTGCCGTGGTTTTTCTTGAGCTCCAAGAATTCTAATGCAAAATGTTAAGAA 1825302 Query 114885 AAAAGTCCATG----------------ATATCCGCGTGCCACGGTTCCAGGTACACCGCG 114928 || || ||| || || |||||||| ||||||| ||||| || Sbjct 1825303 CAACGTGGATGGGGAGTCGTACCAAAAATGTCAGCGTGCCAAGGTTCCAAGTACATGGCA 1825362 Query 114929 ATTGACCCCTTACGACGACCA--GCCT-GGTTTACATACCTCGCTGTGGCATTAAATACG 114985 | |||||||| || ||| |||| ||| ||||| | || ||| | || || ||| Sbjct 1825363 AACGACCCCTTTCGCTTTCCACCGCCTTGGTCGACATAACGGGCCGTGTCGTTGAACACG 1825422 Query 114986 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG 115045 |||||||| |||||||| || | || || || || || ||||| || || Sbjct 1825423 CGAAGCATGGGAATGATCCCGTTCGAAGACCCGTTCGTTCCTCGAATGTAGCTGTTCGTG 1825482 Query 115046 GCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 115105 || | || | ||||||| || ||| || || || |||||||| || || |||||| Sbjct 1825483 GCGCGGATGTTGTGGATGTTCACACCGATTCCACCAGCCCACTTGGAAATGCACGCGCAG 1825542 Query 115106 TCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAG 115165 | | | || |||| || || || |||||||| | || | | | | ||||| Sbjct 1825543 TTTTTCAATGTGTCGTAAATGCCTTCAATCGAGTCGTCTTTCATGGACAGCAAAAAGCAC 1825602 Query 115166 CTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 ||| | ||| || | || || || || ||||| | || ||||| |||||| | || Sbjct 1825603 GACGAGAGTTGAGGGCGCGGCGTGCCGGCATTGAACAACGTGGGTGTTGCGTGGGT-AAA 1825661 Query 115226 ATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAAT 115284 ||| ||||||||| | |||||||| |||||||| ||||| || ||| || Sbjct 1825662 GTACAATTGGGACATGTACTCGTAGGTGGTCAAGACGGACTCGATGTCATCTTTGTGGAT 1825721 Query 115285 ACCGATCGAGACCCGCATAAACATGTATTGGGGT 115318 || | | || ||||||| ||||| ||||||| Sbjct 1825722 GCCCACAGCCACACGCATAATCATGTGTTGGGGT 1825755 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 113593 TGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGA 113652 ||| |||||||| ||||| || ||||||||||| ||||||| || || | |||||||| Sbjct 1823991 TGAGCGGAGGTAATACATGCCGGTCTTGAGCCCACGCTTCCACGCGTAAAAGTGCATCGA 1824050 Query 113653 GGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGAT 113712 | | |||| || |||| | | ||| | |||||| |||| ||| ||| Sbjct 1824051 CGTGAGCTTGCTGATGCTTGGGTCTGCGATGTGCACGTTCATGGATTGGCTTTGGCAGAT 1824110 Query 113713 GAA-GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAG 113771 ||| ||| || || || || |||| || | ||| |||| ||||||||||||||||| Sbjct 1824111 GAATGCG-CCTCGGTCGGCAGCCAGGTCGAGCACGACCTTTTGCTTGATTTCCCACACAG 1824169 Query 113772 TTCTGTA 113778 | |||| Sbjct 1824170 TCTTGTA 1824176 >seq26 Length=915853 Score = 87.8 bits (96), Expect = 2e-12 Identities = 194/289 (67%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 171881 GTGAAGATGTACCTCGT--TTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATT 171938 || ||||| |||| || ||| | || || ||||| || ||| ||||||||||| | Sbjct 570573 GTAAAGATATACCGCGGACTTGCGGCG--TCCTTGCCGCCTTGGAGCCGCGTCCCAAACT 570516 Query 171939 GACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGA 171998 | || |||| | ||||| || ||||| || || | |||| | |||| |||| Sbjct 570515 GTCCGGACGGGACGAGGAGCGGGACGTTGTTGGACCCGACAAAGTCCTGCGCCATGTTGA 570456 Query 171999 CAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACG 172058 | ||||| ||||||| |||| ||||| || || |||| | || ||| || Sbjct 570455 CGATCGTGGATAGGAGGGAGGCTTCCCCGTGGTGATACGCCGTGTGCTCGGCGCAGTAAC 570396 Query 172059 CCGCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGA 172118 |||| | ||| || || ||||| || | |||| | | | ||||||||| | | | Sbjct 570395 CCGCGAGCTGGGCGACTTTCATTTCTGCAACCAGGTGCCGGCGAAAGCACGCAAAGAGCA 570336 Query 172119 CCTTTCTCTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACG 172167 | || | ||| || |||||||||||||| || | || |||||| || Sbjct 570335 CTTTGCGCTGCGACGGCTTGAGGCCGTCAATCACGCTCGGGATGGACCG 570287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350008411480