Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq27 113 5e-20 seq11 91.5 2e-13 >seq27 Length=843962 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| ||||| || |||||||| || ||||| || || || || | || || Sbjct 479964 CACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTC 479905 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 | ||||| || || || ||||| || ||||| || | || | || ||||||||| Sbjct 479904 CAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTG 479845 Query 42119 GATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| ||||| || | ||| | | | || |||| | ||||||||| | ||||||||||| Sbjct 479844 GATCTTTTGCTTCA-CGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTT 479786 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| | |||||| || ||||||||||| Sbjct 479785 TACCCGTCAACGTCTTGACGAAGATTTGCAT 479755 >seq11 Length=1510989 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| ||||| || |||||||| || ||||| || || || || | || || Sbjct 1070351 ACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCG 1070292 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || || | ||||||||||| | || | || |||||||| | Sbjct 1070291 AGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGG 1070232 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || |||||||||| ||| | | | || ||| | ||||| || | ||||||||| || Sbjct 1070231 ATCTTTTGTTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTT 1070173 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT-TTTCA 42213 || || | ||||| || || || ||||| ||||| Sbjct 1070172 CCCAGTCAAAGTCTTGACGAAAATCTGCATATTTCA 1070137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209533933040