Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11 111 2e-19 seq27 96.9 3e-15 seq76 95.1 1e-14 seq1 93.3 4e-14 >seq11 Length=1510989 Score = 111 bits (122), Expect = 2e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 ||||||||| ||||| |||||||| || | ||||| | ||||| ||||||||||| Sbjct 1070340 CGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCGAGCTGCTTGCC 1070281 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| | || | ||||||||||| || || || ||||| || ||||| || ||||| || Sbjct 1070280 CGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGTTT 1070221 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | | || | ||||| || | || | |||||| || |||||||| Sbjct 1070220 GACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTCCCAGTCAAAGT 1070161 Query 64426 TTTTACGAAAATTTGCATTTT 64446 || |||||||| ||||| || Sbjct 1070160 CTTGACGAAAATCTGCATATT 1070140 >seq27 Length=843962 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | || | |||||||| ||||| |||||||| || Sbjct 479982 ACCACCACGCAGGCGGAGCACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCT 479923 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| | |||||||||||| | ||||| || ||||| || || || Sbjct 479922 CAACGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGG 479863 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || |||||||| || || | | || | ||||| Sbjct 479862 GATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCAC 479803 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || || ||||| || || ||||| |||||||| Sbjct 479802 ATCCAACGTGATGGTTTTACCCGTCAACGTCTTGACGAAGATTTGCAT 479755 >seq76 Length=128956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || | ||| | ||||| || || || || ||||| || Sbjct 44874 ACCACCGCGGAGGCGAAGAACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCT 44933 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || | ||||||||||||| | ||||| || ||||| || ||||| Sbjct 44934 CAACGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGG 44993 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATC-ACCGGCGTCCA 64394 ||| ||||| || || || || || ||||| ||| || | | || |||| |||| Sbjct 44994 AATCCCTTCCTTGTCCTGAATCTTCTGCTTGACATTGTCAATCGAGTCGGACGGC-TCCA 45052 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | |||||||||||| | || || || || || ||||| Sbjct 45053 CGTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 45101 >seq1 Length=2817317 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || ||||||||||| ||||| | ||| || || |||| | | ||||| |||| Sbjct 1824868 GATGCCAAGTTGCACACGGCGACTTCGTCTTTGCTCGTGTACTCGATGATTTCGCAGCAC 1824927 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 || || || || || ||||| ||||| | || || || ||| |||||| || || Sbjct 1824928 AAGTTGCTCGATTTGATCGTGCCGAGGTTCTGTTGGTTGGACTTGCCGTTGCACGCATCC 1824987 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTC 154747 |||||||| |||||||||||||| ||||| ||||| | ||| Sbjct 1824988 TTGTACAACATGTACGGGGTGCCTGTTTCTACTTGCGATTC 1825028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641795885640