Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1 141 9e-29 >seq1 Length=2817317 Score = 141 bits (156), Expect = 9e-29 Identities = 1090/1758 (62%), Gaps = 86/1758 (5%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||||| |||||| ||||| || ||||||||||| ||| | | | || | Sbjct 1825826 TACGACTACTTTGGCTTCAAGACTCTCGAAAAGTCGTACCTGCTCCGCGTAAACGACAAG 1825767 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | || ||||| || || || | ||||| || || | || || ||| | ||| Sbjct 1825766 GTGTGTGAACGACCCCAACACATGATTATGCGTGTGGCTGTGGGCATCCACAAAGATGAC 1825707 Query 93838 ATGCCGAAT--GTTTTGCGGGCTTTCAGAG-ACATGCGGGACAAGAGGTATACCATGGCC 93894 || ||| | || ||| | | | ||| ||||| | | | |||| || Sbjct 1825706 AT--CGAGTCCGTCTTGACCACCTAC-GAGTACATGTCCCAATTGTACTTTACCCACGCA 1825650 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 || || || ||||||| || || || ||| || || | || ||||| || || || Sbjct 1825649 ACACCCACGTTGTTCAATGCCGGCACGCCGCGCCCTCAACTCTCGTCGTGCTTTTTGCTG 1825590 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | | || | |||||| || || |||| ||||| | || |||| ||| ||| Sbjct 1825589 TCCATGAAAGACGACTCGATTGAAGGCATTTACGACACATTGAAAAACTGCGCGTGCATT 1825530 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074 || || | || || |||||||| | | ||||| || | || |||| | |||| Sbjct 1825529 TCCAAGTGGGCTGGTGGAATCGGTGTGAACATCCACAACATCCGCGCCACGAACAGCTAC 1825470 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || || || || || || | || ||||| || | || ||||| || || |||||| || Sbjct 1825469 ATTCGAGGAACGAACGGGTCTTCGAACGGGATCATTCCCATGCTTCGCGTGTTCAACGAC 1825410 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 |||| || || || ||||| || ||||| | | | ||||| || || || | || | Sbjct 1825409 ACGGCCCGTTATGTCGACCAAGGCGGTGGAAAGCGAAAGGGGTCGTTTGCCATGTACTTG 1825350 Query 94195 GAGCCCTGGCACGCGGACGTG-------------------CAGGCT-------------- 94221 || || |||||||| ||| | || | | Sbjct 1825349 GAACCTTGGCACGCTGACATTTTTGGTACGACTCCCCATCCACGTTGTTCTTAACATTTT 1825290 Query 94222 ---------TTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGAC 94272 ||| | || || || |||||||||||||| || | | ||| | ||| Sbjct 1825289 GCATTAGAATTCTTGGAGCTCAAGAAAAACCACGGCAACGAGCTCCACCGCGCCCGCGAC 1825230 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCC 94332 | ||||| || | ||| | || ||| | || ||||| |||||||| ||| || Sbjct 1825229 TTGTTCTATGCCATGTGGATCCCGGACTTGTTCATGAAGCGCGTCGAATCCAACGGCGAA 1825170 Query 94333 TGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTT 94392 |||||| | || || ||||||||| || || || ||| || || || || Sbjct 1825169 TGGAGTTTGTTCTGCCCCAATGAAGCCCCTGGCTTGCACGAGTGCTGGGGCTCCGAGTTC 1825110 Query 94393 GAAGACTTGTATGCTCGT--TACGA-ATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCT 94449 || | | | | | || ||||| | | ||||| | | | || || | || Sbjct 1825109 GACGC--TCTCTTCACGAAATACGAGAAGGAAGGGCGTGCTC-GAAAAACCATCAAGGCG 1825053 Query 94450 AGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTG 94509 | | |||||| | ||| |||| || || || || || || || ||||| ||| Sbjct 1825052 CAGCAACTGTGGTTTGCCATCTTGGAATCGCAAGTAGAAACAGGCACCCCGTACATGTTG 1824993 Query 94510 TTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAA---GAGC 94566 | |||||| | ||||| |||||||||||| ||| ||||||| |||||| |||| Sbjct 1824992 TACAAGGATGCGTGCAACGGCAAGTCCAACCAACAGAACCTCGGCACGATCAAATCGAGC 1824933 Query 94567 TCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAAC 94626 || ||||| ||| || ||||||| || ||||| | || ||||| ||| Sbjct 1824932 ---AACTTGTGCTGCGAAATCATCGAGTACACGAGCAAAGACGAAGTCGCCGTGTGCAAC 1824876 Query 94627 CTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTC 94686 ||| |||||| || |||| || || |||| || || | |||| Sbjct 1824875 TTGGCATCCATCGCGCTCTCCAAGTTTGTT-GAGA-------------ACGGCGT-GTTC 1824831 Query 94687 GATCTGGAGGAGCTTGTG-AACTTCGCGGGAAGGATGGTCTTGA---ACCTGAACAGGGT 94742 || | | | |||| || |||| |||| ||||| || || |||||| ||| Sbjct 1824830 GACTTCCAACA-CTTGCACAAGATCGCC--AAGG-TGGTCACGACCAACTTGAACAAGGT 1824775 Query 94743 AATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCC 94802 |||||| |||| ||||||| || || ||| ||| ||| || ||| || || Sbjct 1824774 CATCGACGTCAACTACTACCCCATCGAAGAAGCGCGCAACAGCAACATGCGGCACCGCCC 1824715 Query 94803 CATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGA 94862 |||||||| || ||||| || | ||||| ||| | | | ||| | | | | ||| Sbjct 1824714 GATCGGCATTGGTGTCCAAGGGCTGGCGGATGCGTTTATCCTCATGGGATTCGCGTTCGA 1824655 Query 94863 CTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCAT 94922 || | | || | ||||| | || || || | || || ||| ||||| Sbjct 1824654 GTCGCCCCAAGCCAAGCTGTTGAACCAACAGATCTTTGAGACGATCTACCACGCCGCCAT 1824595 Query 94923 GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATC 94982 | || ||| | | | || | | || | || ||| ||||| ||| || ||| || Sbjct 1824594 GGAAACTTCCATGGAACTCGCAAAAGCGCAAGG---GCCTTACGAAACGTACCACGGGTC 1824538 Query 94983 GCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTA 95042 |||| | |||| | || |||| ||| | ||| ||| | || ||| |||| Sbjct 1824537 GCCCGTAAGCAAGGGGCTGTTCCAGTACGATATGTGGAATGTTACCCCGTCGCCGCTGTG 1824478 Query 95043 CGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGT 95102 || |||| | | ||| | || | ||||| | | || || |||| | Sbjct 1824477 GGATTGGGCCACGTTGAAAGCTCAAGTCGCTCAGCACGGCATCAGGAATTCGTTGCTGTT 1824418 Query 95103 GGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACC 95162 |||||| ||||| || || || || || ||||||||||||||||||||||| |||| || Sbjct 1824417 GGCCCCGATGCCTACCGCGTCGACCGCCCAGATCCTTGGCAACAACGAGTCCATCGAGCC 1824358 Query 95163 CTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAA 95222 |||||| |||| |||||| | | || || | || || |||||| | | | ||||| Sbjct 1824357 CTTCACGAGCAACATGTACAGCCGCCGTGTCTTGGCAGGTGAATTCACGATTGTGAACAA 1824298 Query 95223 GCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACT 95282 | || | | ||| || | || || || ||||| | | ||| ||||| | Sbjct 1824297 GTACTTGATGAAGGAGCTCATTTCGCTCGGCCTGTGGAACGCGGACGTCCGCAACCAGAT 1824238 Query 95283 GCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCT 95342 | | || | |||| || |||||| || || || || | | | | |||| | Sbjct 1824237 CTTGCACGACCGCGGCAGTGTGCAGAACGTCGCGTCGATCCCTGCGCATGTGAAGGAAGT 1824178 Query 95343 CTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGG 95402 |||||||| |||||||| ||| ||| || | ||||||| || |||| ||| || Sbjct 1824177 GTACAAGACTGTGTGGGAAATCAAGCAAAAGGTCGTGCTCGACCTGGCTGCCGACCGAGG 1824118 Query 95403 GCCCTTCATCTGCCAGAG 95420 | ||||||||||| || Sbjct 1824117 CGCATTCATCTGCCAAAG 1824100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720225476760