Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 seq76 113 4e-20 seq11 107 2e-18 seq27 93.3 4e-14 >seq1 Length=2817317 Score = 116 bits (128), Expect = 4e-21 Identities = 177/247 (72%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 153005 AATGAGGTCATCGATCAAGTACTGGTTGACCA-CTTGAAACTCGCCCGCCAACACTCGTC 153063 |||||| || | |||||||||| ||| || | | |||| || || ||||| || || | Sbjct 1824276 AATGAGCTCCTTCATCAAGTACTTGTTCACAATCGTGAAT-TCACCTGCCAAGACACGGC 1824334 Query 153064 TCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCG 153123 || | ||||| ||||| || || | ||| ||||| ||||| || || || || | Sbjct 1824335 GGCTGTACATGTTGCTCGTGAAGGGCTCGATGGACTCGTTGTTGCCAAGGATCTGGGCGG 1824394 Query 153124 TGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATG 153182 | | ||||| ||||| |||| || ||| ||||||| | ||||||| | ||| | Sbjct 1824395 TCGACGCGGTAGGCATCGGGGCCAACAGCAACGAATTCCTGATGCCGTGCTGAGCGACTT 1824454 Query 153183 TCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTAC 153242 | | ||||||| |||||||||||||| |||||| || | |||||||| |||||| Sbjct 1824455 GAG-CTTTCAACGTGGCCCAATCCCACAGCGGCGACGGGGTAACATTCCACATATCGTAC 1824513 Query 153243 TGTAACA 153249 || |||| Sbjct 1824514 TGGAACA 1824520 >seq76 Length=128956 Score = 113 bits (124), Expect = 4e-20 Identities = 167/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 ||| || || || | || | ||| ||||| | | | |||||||| || || |||||||| Sbjct 44871 GCAACCACCGCGGAGGCGAAGAACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTC 44930 Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 ||||| || || ||||| | || || |||| | |||| || || || || ||||| Sbjct 44931 GCTCAACGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGG 44990 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACT 138562 ||| || ||||| ||||| || || || || | |||| || | | ||||| || || Sbjct 44991 AGGAATCCCTTCCTTGTCCTGAATCTTCTGCTTGACATTG-TCAATCGAGTCGGACGGCT 45049 Query 138563 CCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||| |||| ||| | || || || || || || || ||||| |||||||||| Sbjct 45050 CCACGTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGG 45103 >seq11 Length=1510989 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | ||| || || | | || |||||||| ||||||||||||||| Sbjct 1070369 CCCCCACGCAGGCGGAGAACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTC 1070310 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || ||||| || || || | | |||| | ||||| ||||| || || Sbjct 1070309 AACGTGCGGCCATCTTCGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGG 1070250 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| |||||||| | | || | | ||| | | |||||| Sbjct 1070249 ATGCCTTCCTTGTCTTGGATCTTTTGTTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 1070190 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || ||||||| ||| || || ||||||||||| Sbjct 1070189 TCCAGCGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 1070143 >seq27 Length=843962 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | || || || | | | || |||||||| ||||||||||||||| Sbjct 479981 CCACCACGCAGGCGGAGCACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCTC 479922 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||| || |||| | |||| || || || || || || || Sbjct 479921 AACGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGG 479862 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||||| || | | || | | ||||| | ||||| Sbjct 479861 ATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACA 479802 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 || | ||| | |||||||| |||| || || || || || ||||||| Sbjct 479801 TCCAACGTGATGGTTTTACCCGTCAACGTCTTGACGAAGATTTGCATGG 479753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259416222320