Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11 120 3e-22 seq1 107 2e-18 seq18 100 3e-16 >seq11 Length=1510989 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||| || || ||||| || ||||| |||| || |||||| ||| || Sbjct 1070351 ACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCG 1070292 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || || ||||||| |||||||| || || || ||||| |||||||| | Sbjct 1070291 AGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGG 1070232 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || || |||| ||||| ||| | ||||| | ||| || || | || | || || Sbjct 1070231 ATCTTTTGTTTGACGTTGT-CGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTT 1070173 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| || || ||||||||||| Sbjct 1070172 CCCAGTCAAAGTCTTGACGAAAATCTGCAT 1070143 >seq1 Length=2817317 Score = 107 bits (118), Expect = 2e-18 Identities = 321/493 (65%), Gaps = 8/493 (2%) Strand=Plus/Plus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||| || |||||||| |||| | || ||| || ||| || || ||||||||||| Sbjct 1823955 GTCCACCGTGAACTGGATCGCATCGGCTTTCGGGCGTGAGCGGAGGTAATACATGCCGGT 1824014 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGACCGAG----TACGTGG 145834 ||||||| || ||||| ||||||||| || |||| ||| | | | | ||| Sbjct 1824015 CTTGAGCCCACGCTTCCACGCGTAAAAGTGCAT---CGACGTGAGCTTGCTGATGCTTGG 1824071 Query 145835 GTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGG 145894 || | |||| || || | |||||||| || ||||| | | |||||||| | Sbjct 1824072 GT-CTGCGATGTGCACGTTCATGGATTGGCTTTGGCAGATGAATGCGCCTCGGTCGGCAG 1824130 Query 145895 CCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGT 145954 ||| ||| | || | |||| || |||||||| | || || | | ||||| || | Sbjct 1824131 CCAGGTCGAGCACGACCTTTTGCTTGATTTCCCACACAGTCTTGTACACTTCCTTCACAT 1824190 Query 145955 GCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCA 146014 || || || | | |||||||||| || ||| ||| || | |||||| | Sbjct 1824191 GCGCAGGGATCGACGCGACGTTCTGCACACTGCCGCGGTCGTGCAAGATCTGGTTGCGGA 1824250 Query 146015 ATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCT 146074 || | | | | | | | ||| |||| || | |||| ||| || | | Sbjct 1824251 CGTCCGCGTTCCACAGGCCGAGCGAAATGAGCTCCTTCATCAAGTACTTGTTCACAATCG 1824310 Query 146075 GAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACT 146134 || || || || | || || | |||| |||||| ||||| ||||||| |||| Sbjct 1824311 TGAATTCACCTGCCAAGACACGGCGGCTGTACATGTTGCTCGTGAAGGGCTCGATGGACT 1824370 Query 146135 CGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGT 146194 ||||||| || || ||||| || |||| ||||||||||| |||| |||||| || | Sbjct 1824371 CGTTGTTGCCAAGGATCTGGGCGGTCGACGCGGTAGGCATCGGGGCCAACAGCAACGAAT 1824430 Query 146195 TTCTCACGCCGTG 146207 | || | |||||| Sbjct 1824431 TCCTGATGCCGTG 1824443 >seq18 Length=1130244 Score = 100 bits (110), Expect = 3e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 47354 CGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGG 47413 ||| |||||||| ||||||| | ||||| || ||| ||||||| | | || Sbjct 427010 CGACGCCGTCGCGATTGAGAAGCAGTTTGTCAGTGAGAGCCTGCCCGTGGAGCTCATTGG 426951 Query 47414 AATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCA 47473 |||||| || | ||| | ||||||| || || ||| || ||||| |||| Sbjct 426950 CATGAACTCGTCCCTCATGTGCGAGTACATTGAGTTCTGCGCGGATCGCCTCCTCGAAGC 426891 Query 47474 GCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTC 47533 || |||||| | ||| || |||| || ||||| | ||| ||| || || Sbjct 426890 CCTCGGCGCCCCCAAGCTGTACGCGGCCAAGAACCCGTTCGACTGGATGGACATGATCTC 426831 Query 47534 GCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| ||||||||||||||||||||||||||||||||||||| || Sbjct 426830 GCTCCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAGTA 426786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497941051440