Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq18 132 6e-26 seq1 131 2e-25 seq26 86.0 8e-12 >seq18 Length=1130244 Score = 132 bits (146), Expect = 6e-26 Identities = 558/863 (65%), Gaps = 26/863 (3%) Strand=Plus/Plus Query 127226 TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTC 127285 |||| ||| || ||||| ||||||||||| ||||| ||||| || | ||| ||| | Sbjct 426780 TTGCTGTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGCGAGATCATG 426839 Query 127286 TCCATAAAATCAAATGGGTTCTTTGAGT--TCCAAATTGTTGGCACCCCAATCTGTTTGA 127343 ||||| | || || |||||||| | | || ||| ||| || || | || Sbjct 426840 TCCATCCAGTCGAACGGGTTCTTGGCCGCGTACAGCTTGGGGGCGCCGAGGGCT--TCGA 426897 Query 127344 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 127403 |||| ||||||| | | ||||||||||||| |||| |||||||| || |||| Sbjct 426898 GGAGGCGATCCGCGCAGAACTCAATGTACTCGCACATGAGGGACGAGTTCATGCCAATGA 426957 Query 127404 GGTTACATGGGAGCGCGTCCAA-GATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACG 127462 | | || ||| || || || ||| ||||||||| | || || || | ||| Sbjct 426958 GCTC-CACGGGCAGGCTCTCACTGACAAACTGCTTCTCAATCGCGACGGCGTCGCCGACG 427016 Query 127463 ATGGCGTGAATAGT---GTCC-ACCCCAGGTCTATT-GCGTAAAGT-CTTGAAGAGTTCC 127516 || |||| || ||| || | || | || | ||| | | ||| | Sbjct 427017 ATCTCGTGGATGCGCTGGTCGGACAACTTGTTGACGAGCTTCGAGTACATCAAG-----C 427071 Query 127517 ACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576 || ||||| || ||| ||||| ||||| || || |||||||| ||||||||| ||| | Sbjct 427072 AC-GCAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGAAGGACAAA 427130 Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 || ||||| ||||| |||||||| | |||||| || | || || || || ||||||||| Sbjct 427131 CCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGGAGCAGAACGACCCCGAGAAGAAG 427190 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG-AGCGGGACTTTGTATC 127695 || || || ||| || || |||| | ||| || || ||| ||| | ||| | || Sbjct 427191 ATGCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACG-CTTATTGTC 427249 Query 127696 AAACCACTTCATCGCCCACTGTGCCTTTTTCTC-GATACATGGGACGGTCTGGATCGCTT 127754 ||||||||| ||||| ||| |||| || || ||| |||| || | || || Sbjct 427250 GCACCACTTCAAAGCCCA-GGTGGCTTTGCGTCGGACACAGGGGATCGTGTCAATGGCAC 427308 Query 127755 CAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATG 127814 | || | |||||| | | ||| ||||||||| | || ||||| || || Sbjct 427309 GCAGGACCCGGTCCTTTTCCGTGGCATCCTTGATGTACGTGTCGATGAGGAGCGAGTACA 427368 Query 127815 TTTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCT 127872 ||| ||| | | ||| |||||| ||| || ||||||| | || ||||| Sbjct 427369 CTTCAGAGTGAATGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCACCGGGCTTCAGG 427426 Query 127873 TATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCC 127932 | ||||| |||| | ||| || | || || || || || || || | | Sbjct 427427 CACTTGTACTTCATTGCTAAAGTTCATCGCGAGGTTTTCGTTCACGATCCCGTCACTCGC 427486 Query 127933 AGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCA 127992 ||||| |||||||| | || | | ||||| |||| || ||| | || | ||| Sbjct 427487 GGCAAAGAACGCCAGCACATGCGTGATGAAGAAACGTTCGTTGTCGGTAAGCTTGACCCA 427546 Query 127993 GTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTT 128052 |||| |||| | | |||| ||| ||||| ||||| |||| || ||||| Sbjct 427547 GTCGCGTTGATCGTGCACCAAGTCTAGCTCTTCCGCTGTCCAGAAGCTCGCTTCCGCCTT 427606 Query 128053 CTTATAGAGTTCCCAGAGGTGGG 128075 || || | ||||| | || || Sbjct 427607 TTTGTACATCTCCCACACGTCGG 427629 >seq1 Length=2817317 Score = 131 bits (144), Expect = 2e-25 Identities = 288/427 (67%), Gaps = 5/427 (1%) Strand=Plus/Plus Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGACCA--GCCT 116914 || || |||||||| ||||||| ||||| || | |||||||| || ||| |||| Sbjct 1825330 ATGTCAGCGTGCCAAGGTTCCAAGTACATGGCAAACGACCCCTTTCGCTTTCCACCGCCT 1825389 Query 116915 -GGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGAT 116973 ||| ||||| | ||||| |||| || ||||||||||| |||||||| || | || Sbjct 1825390 TGGTCGACATAACGGGCCGTGTCGTTGAACACGCGAAGCATGGGAATGATCCCGTTCGAA 1825449 Query 116974 TGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCA 117033 || || || || ||||| || |||| | || | |||||||| || ||| Sbjct 1825450 GACCCGTTCGTTCCTCGAATGTAGCTGTTCGTGGCGCGGATGTTGTGGATGTTCACACCG 1825509 Query 117034 ATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 117093 || || || |||||||| || || ||||| | | | || |||| || || || Sbjct 1825510 ATTCCACCAGCCCACTTGGAAATGCACGCGCAGTTTTTCAATGTGTCGTAAATGCCTTCA 1825569 Query 117094 ATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCA 117153 |||||||| | || | | | | ||||| ||| | ||| || | || || || Sbjct 1825570 ATCGAGTCGTCTTTCATGGACAGCAAAAAGCACGACGAGAGTTGAGGGCGCGGCGTGCCG 1825629 Query 117154 GCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGT 117212 || ||||| | || ||||| |||||| | || ||| ||||||||| | |||||||| Sbjct 1825630 GCATTGAACAACGTGGGTGTTGCGTGGGT-AAAGTACAATTGGGACATGTACTCGTAGGT 1825688 Query 117213 CTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTA 117272 |||||| || ||||| || ||| || || | | || ||||||| ||||| Sbjct 1825689 GGTCAAGACGGACTCGATGTCATCTTTGTGGATGCCCACAGCCACACGCATAATCATGTG 1825748 Query 117273 TTGGGGT 117279 ||||||| Sbjct 1825749 TTGGGGT 1825755 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 115554 TGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGA 115613 ||| |||||||| ||||| || ||||||||||| ||||||| || || | ||||| || Sbjct 1823991 TGAGCGGAGGTAATACATGCCGGTCTTGAGCCCACGCTTCCACGCGTAAAAGTGCATCGA 1824050 Query 115614 GGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGAT 115673 | | |||| || |||| | | ||| | |||||| |||| ||| ||| Sbjct 1824051 CGTGAGCTTGCTGATGCTTGGGTCTGCGATGTGCACGTTCATGGATTGGCTTTGGCAGAT 1824110 Query 115674 GAA-GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAG 115732 ||| ||| || || || || |||| || | ||| |||| ||||||||||||||||| Sbjct 1824111 GAATGCG-CCTCGGTCGGCAGCCAGGTCGAGCACGACCTTTTGCTTGATTTCCCACACAG 1824169 Query 115733 TTCTGTA 115739 | |||| Sbjct 1824170 TCTTGTA 1824176 >seq26 Length=915853 Score = 86.0 bits (94), Expect = 8e-12 Identities = 181/268 (68%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 175901 GTGAAGATGTACCTCGT--TTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATT 175958 || ||||| |||| || ||| | || || ||||| || ||| ||||||||||| | Sbjct 570573 GTAAAGATATACCGCGGACTTGCGGCG--TCCTTGCCGCCTTGGAGCCGCGTCCCAAACT 570516 Query 175959 GACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGA 176018 | || | || | ||||| || ||||| || || | | |||| | ||||| |||| Sbjct 570515 GTCCGGACGGGACGAGGAGCGGGACGTTGTTGGACCCGACAAAGTCCTGCGCCATGTTGA 570456 Query 176019 CAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACG 176078 | ||||| ||||||| |||| ||||| || || |||| | || || || Sbjct 570455 CGATCGTGGATAGGAGGGAGGCTTCCCCGTGGTGATACGCCGTGTGCTCGGCGCAGTAAC 570396 Query 176079 CCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGA 176138 |||| | ||| || || ||||| || | |||| | | | ||||||||| | | | Sbjct 570395 CCGCGAGCTGGGCGACTTTCATTTCTGCAACCAGGTGCCGGCGAAAGCACGCAAAGAGCA 570336 Query 176139 CCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 | || | ||| || |||||||||||||| Sbjct 570335 CTTTGCGCTGCGACGGCTTGAGGCCGTC 570308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503511287960