Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 102 1e-16 seq18 87.8 3e-12 >seq1 Length=2817317 Score = 102 bits (112), Expect = 1e-16 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT---CTCAGATAGTACATGCC 203898 ||||||||||||||| || || | |||| | || | | || || |||||||| Sbjct 1823955 GTCCACCGTGAACTGGATCGCAT---CGGCTTTCGGGCGTGAGCGGAGGTAATACATGCC 1824011 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 |||||| || || || |||| |||| | |||||| || | || ||||| | | | || Sbjct 1824012 GGTCTTGAGCCCACGCTTCCACGCGTAAAAGTGCATCGACGTGAGCTTGCTGATGCTTGG 1824071 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 ||| || ||||| | ||||| || ||||||||| |||| || ||||| || || || | Sbjct 1824072 GTCTGCGATGTGCACGTTCATGGATTGGCTTTGGCAGATG-AATGCGCCTCGGTCGGCAG 1824130 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTC 204069 ||| | || | | ||| ||| || |||||||| |||||| |||| || Sbjct 1824131 CCAGGTCGAGCACGACCTTTTGCTTGATTTCCCACACAGTCTTGTACACTTC 1824182 >seq18 Length=1130244 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 ||||||||||||||||||||| || ||||| ||||| |||| ||||| || | | | Sbjct 427070 GCACGCAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGAAGGACAA 427129 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAA 160040 |||||||| | || ||| |||||||| || |||| ||| || ||| | | || | Sbjct 427130 ACCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGACCCCGAGAAGA 427188 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGA 160070 |||| || || || || ||||| || |||| Sbjct 427189 AGATGCCTTCGACAGCGGCAAAGGCAACGA 427218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795150419129360