Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq27 143 6e-29 seq76 118 2e-21 seq11 111 4e-19 >seq27 Length=843962 Score = 143 bits (158), Expect = 6e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| |||||||||| ||||||||| ||| || | |||||||||| ||||| ||| Sbjct 479951 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCCAATTGCTTGCCG 479892 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || |||||||| || ||||| || || || ||||| ||||| |||||||||||| Sbjct 479891 GCAAAGATGAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTC 479832 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| |||| | ||| | || ||| |||||||||||||| || |||||||| | || Sbjct 479831 ACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTACCCGTCAACGTC 479772 Query 199613 TTCACAAAAATTTG 199626 || || || ||||| Sbjct 479771 TTGACGAAGATTTG 479758 >seq76 Length=128956 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || ||||||||||| |||| |||||||| ||| || | ||||| |||| |||| Sbjct 44899 TGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTCAACGTGCGGCCATCCTCCAACTGC 44958 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| |||||||| || ||||| |||||| ||| ||||| ||||||||||| Sbjct 44959 TTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTTC 45018 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||| || || | | ||| | | || || || | ||| || ||||| || ||| Sbjct 45019 TGCTTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTTGCCGGTG 45078 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || Sbjct 45079 AGGGTCTTGACAAAGATCTG 45098 >seq11 Length=1510989 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| |||||||||| ||||||||| ||| || | |||||||| |||||||| || Sbjct 1070339 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCGAGCTGCTTGCCC 1070280 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | ||||||||||| || || ||||| || || |||||||| || Sbjct 1070279 GCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGTTTG 1070220 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| |||| | ||| | | || || |||| |||||| ||||| || || | ||| Sbjct 1070219 ACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTCCCAGTCAAAGTC 1070160 Query 199613 TTCACAAAAATTTG 199626 || || ||||| || Sbjct 1070159 TTGACGAAAATCTG 1070146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178914334527227