Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq27 113 3e-20 >seq27 Length=843962 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| || || ||||| ||||| || ||| ||||| || || || ||| | Sbjct 479981 CCACCACGCAGGCGGAGCACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCTC 479922 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| |||||||| || ||| |||| || | || |||||||| | ||| Sbjct 479921 AACGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGG 479862 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || ||||| || | ||| | | | | ||| | |||||| Sbjct 479861 ATGCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGTTGTCGATCGAGTCGGATGGTTCCAC 479803 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || ||||||||||| || || || |||||||| |||||| Sbjct 479802 ATCCAACGTGATGGTTTTACCCGTCAACGTCTTGACGAAGATTTGCATG 479754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347367563654273