Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq18 235 5e-57 seq11 118 1e-21 seq27 116 4e-21 seq76 104 2e-17 >seq18 Length=1130244 Score = 235 bits (260), Expect = 5e-57 Identities = 439/632 (69%), Gaps = 16/632 (3%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||||||||| ||||||||||| |||| || ||||| | |||||||||||||| || Sbjct 427063 ACATCAAGCACGCAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGA 427122 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | ||| || ||||| || || || || |||||||| || |||| | ||| |||| Sbjct 427123 AGGACAAACCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGGAGCAGAACGACCCCG 427182 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| ||| ||||| || || || || || | || || || | | || | Sbjct 427183 AGAAGAAGATGCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACGCT 427242 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | || || ||| || ||||| ||| || | ||| || || ||||| || | Sbjct 427243 TATTGTCGCACCACTTCAAAGCCCAGGTGGCTTTGCGTCGGACACAGGGGATCGTGTCAA 427302 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGG 133183 |||| || | ||| | || ||||| || | | | ||| |||||||||||| Sbjct 427303 TGGCACGCAGGACCCGG---TCCTTTTCCGTGGCATCCTTGATGTACGTGTCGATGAGGA 427359 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 ||| |||| ||| ||||| | |||||| ||||| || || || ||||| |||||||| | Sbjct 427360 GCGAGTACACTTCAGAGTGAATGTTCTCAATGGCAATCTGGAACCCGTAGAAGCACCGGG 427419 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGC--TCGACCAGATTTTCGTTGACGATGCC 133301 | || ||| || ||||| | || ||| ||| | || |||||||| ||||| || Sbjct 427420 CTTCAGGCACTTGTACTTCATT-GCTAAAGTTCATCG-CGAGGTTTTCGTTCACGATCCC 427477 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 ||| || ||||| || || |||||||| ||| ||||||| || ||||||||| | || Sbjct 427478 GTCACTCGCGGCAAAGAACGCCAGCACATGCGTGATGAAGAAACGTTCGTTGTCGGT-AA 427536 Query 133362 GCGCT-CCCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGAC 133419 || |||||||||| || | || || | ||| | ||| || | ||||| || | Sbjct 427537 GCTTGACCCAGTCGCGT-TGATCGTGCACCAAGTCTAGCTCTTCCGCTGTCCAGAAGCTC 427595 Query 133420 GCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAAC 133479 || || || ||||||||||| ||||| ||| | | ||| || || || | ||| ||| Sbjct 427596 GCTTCCGCCTTTTTGTACATCTCCCACACGTCGGCGTGTTGGATCGGGAAGAGCACGAAC 427655 Query 133480 CGGCGGGGGTTTTCGCGCAA-CAGCGGCTCCG 133510 | | || ||||| |||| | |||||||| Sbjct 427656 CTGTTCGGATTTTC-TGCAAGGAACGGCTCCG 427686 >seq11 Length=1510989 Score = 118 bits (130), Expect = 1e-21 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || | || || || |||||||| | ||||| ||| | Sbjct 1070139 AAATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGCTGGACGTGGAGCC 1070198 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC- 38357 | ||| | | |||| | ||| |||| |||| ||||| || || || |||||| Sbjct 1070199 TTCGGACTCGATCGACAACG-TCAAACAAAAGATCCAAGACAAGGAAGGCAT-CCCGCCT 1070256 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||| ||||| | || | |||||||| ||||| || || | ||||| | | |||| Sbjct 1070257 GACCAGCAGCGCTTGATCTTTGCGGGCAAGCAGCTCGAAGATGGCCGCACGTTGAGCGAC 1070316 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||||||||| ||||| |||| ||||| || || Sbjct 1070317 TACAACATCCAAAAGGAATCGACGTTGCACTTGGTTCTCCG 1070357 >seq27 Length=843962 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||| | ||||| ||||||||||| | || || || | || Sbjct 479755 ATGCAAATCTTCGTCAAGACGTTGACGGGTAAAACCATCACGTTGGATGTGGAACCATCC 479814 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || |||| |||| ||||| || || || ||| | || || Sbjct 479815 GACTCGATCGACAACG-TGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCA 479873 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | || ||||| || |||| || | ||||| | | ||||||||| Sbjct 479874 GCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACGTTGAGCGACTACAA 479933 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||||| |||| |||| |||||||| || Sbjct 479934 CATCCAAAAGGAATCGACCTTGCACTTGGTGCTCCG 479969 >seq76 Length=128956 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||| || ||||||| ||| | || Sbjct 45101 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATTACGCTCGACGTGGAGCCGTCC 45042 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || || | | || | || || | ||||| || || ||||| | || || Sbjct 45041 GACTCGATTGACAATG-TCAAGCAGAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCA 44983 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | || ||||| ||| |||| || | ||||| | | ||||||||| Sbjct 44982 GCAACGACTCATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGCACGTTGAGCGACTACAA 44923 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| |||| ||||||||||| || || Sbjct 44922 TATCCAGAAGGAGTCGACCCTGCATTTGGTTCTTCG 44887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169792711040