Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq18 131 2e-25 seq1 91.5 2e-13 seq26 86.0 8e-12 >seq18 Length=1130244 Score = 131 bits (144), Expect = 2e-25 Identities = 202/286 (71%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||||| | || ||| | | | || | ||||| | Sbjct 427357 CTCATCGACACGTACATCAAGGATGCCACGGAAAAGGACCGGGTCCTGCGTGCCATTGAC 427298 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 || | || ||| | | | ||||| |||||| ||||||||| || | ||| || Sbjct 427297 ACGATCCCCTGTGTCCGACGCAAAGCCACCTGGGCTTTGAAGTGGTGCGACAATAAG-CG 427239 Query 102168 CGTT-CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | | ||| ||||| || || | || ||||| ||| || || ||||||||||| || Sbjct 427238 TGCTGCCTACGCTGAACGTATCGTTGCCTTTGCCGCTGTCGAAGGCATCTTCTTCTCGGG 427179 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 || |||||| | || | |||||||||||||||||||| ||||| ||| | | |||||| Sbjct 427178 GTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGTCTAATGCCGGGTTTGTCCTTCTC 427119 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||||| || || ||||| ||||| || || ||| || |||||| Sbjct 427118 GAACGAACTCATTTCTCGCGACGAAGGTCTGCACTGCGACTTTGCG 427073 >seq1 Length=2817317 Score = 91.5 bits (100), Expect = 2e-13 Identities = 242/365 (66%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| | ||||| || || | || ||||| || || || || || || ||| | Sbjct 1825747 ACATGATTATGCGTGTGGCTGTGGGCATCCACAAAGATGACATCGAGTCCGTCTTGACCA 1825688 Query 111679 CATACGACAAGATGTCCCG-TGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCT 111737 | ||||| | ||||||| | ||| || | |||||||||||| || | ||||| || Sbjct 1825687 CCTACGAGTACATGTCCCAATTGTACTTT-ACCCACGCAACACCCACGTTGTTCAATGCC 1825629 Query 111738 GGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC----AAGGAGGATTC 111793 || || || | || ||| | || || || ||| |||| | || || || || Sbjct 1825628 GGCACGCCGCGCCCTCAACTCTC--GTCGTG--CTTTTTGCTGTCCATGAAAGACGACTC 1825573 Query 111794 AATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGG 111853 || | |||||||||| ||| | | | || || || || |||||||||||||| Sbjct 1825572 GATTGAAGGCATTTACGACACATTGAAAAACTGCGCGTGCATTTCCAAGTGGGCTGGTGG 1825513 Query 111854 TATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGG 111913 ||||| || ||||||| | || | |||| || ||| |||| || || || Sbjct 1825512 AATCGGTGTGAACATCCACAACATCCGCGCCACGAACAGCTACATTCGAGGAACGAACGG 1825453 Query 111914 TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAA 111973 || | || || ||||| ||||||||||| || |||| ||| || || ||||| | Sbjct 1825452 GTCTTCGAACGGGATCATTCCCATGCTTCGCGTGTTCAACGACACGGCCCGTTATGTCGA 1825393 Query 111974 CCAAG 111978 ||||| Sbjct 1825392 CCAAG 1825388 >seq26 Length=915853 Score = 86.0 bits (94), Expect = 8e-12 Identities = 181/268 (68%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 175994 GTAAAGATATACCTCG--TTTGAGACGCATCCTTACCACCCATGAGACGCGTACCAAACT 176051 ||||||||||||| || ||| | || ||||| || || ||| ||||| ||||||| Sbjct 570573 GTAAAGATATACCGCGGACTTGCG--GCGTCCTTGCCGCCTTGGAGCCGCGTCCCAAACT 570516 Query 176052 GACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGA 176111 | || |||| | || || || ||||| || || | |||| | ||||| |||| Sbjct 570515 GTCCGGACGGGACGAGGAGCGGGACGTTGTTGGACCCGACAAAGTCCTGCGCCATGTTGA 570456 Query 176112 CAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATG 176171 | |||||| ||| ||| |||| |||||||| ||||| | | ||| ||| | Sbjct 570455 CGATCGTGGATAGGAGGGAGGCTTCCCCGTGGTGATACGCCGTGTGCTCGGCGCAGTAAC 570396 Query 176172 CCGCCAACTGCGCCACTTTCATCTCATCCTTGAGATTCTTGTGGAAACATGCGTACATAA 176231 |||| | ||| || |||||||| || | || | | | | || || || | | | Sbjct 570395 CCGCGAGCTGGGCGACTTTCATTTCTGCAACCAGGTGCCGGCGAAAGCACGCAAAGAGCA 570336 Query 176232 CCTTGCGTTGCGAAGGCTTGAGACCATC 176259 | ||||| ||||| |||||||| || || Sbjct 570335 CTTTGCGCTGCGACGGCTTGAGGCCGTC 570308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738667786320