Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 120 4e-22 seq18 114 2e-20 >seq1 Length=2817317 Score = 120 bits (132), Expect = 4e-22 Identities = 287/428 (67%), Gaps = 7/428 (2%) Strand=Plus/Plus Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGCCCAGC---T 106945 || || |||||||| || || | || | || | || |||||||| ||| | | Sbjct 1825330 ATGTCAGCGTGCCAAGGTTCCAAGTACATGGCAAACGACCCCTTTCGCTTTCCACCGCCT 1825389 Query 106946 TGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGAT 107005 || | ||||| || || ||| |||| || ||||||||||| ||||| || || | || Sbjct 1825390 TGGTCGACATAACGGGCCGTGTCGTTGAACACGCGAAGCATGGGAATGATCCCGTTCGAA 1825449 Query 107006 TGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCC 107064 || || || || ||||| || | || |||| | | | ||||||| || || Sbjct 1825450 GACCCGTTCGTTCCTCGAATGT-AGCTGTTCGTGGCGCGGATGTTGTGGATGTTCACACC 1825508 Query 107065 AATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTT 107124 || || ||||||||||| || || ||| || | | | || | || || || | Sbjct 1825509 GATTCCACCAGCCCACTTGGAAATGCACGCGCAGTTTTTCAATGTGTCGTAAATGCCTTC 1825568 Query 107125 GATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACC 107184 || ||||| || || ||| | | ||||| || | || || | || || || Sbjct 1825569 AATCGAGTCGTCTTTCATGGACAGCAAAAAGCACGACGAGAGTTGAGGGCGCGGCGTGCC 1825628 Query 107185 AGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATG 107243 |||||||| | || ||||||||||| | || ||| ||||||||| | ||||| | Sbjct 1825629 GGCATTGAACAACGTGGGTGTTGCGTGGGT-AAAGTACAATTGGGACATGTACTCGTAGG 1825687 Query 107244 TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 | |||||| || || ||||| || ||||||||| | ||||||||||||| ||||| Sbjct 1825688 TGGTCAAGACGGACTCGATGTCATCTTTGTGGATGCCCACAGCCACACGCATAATCATGT 1825747 Query 107304 ATTGGGGT 107311 ||||||| Sbjct 1825748 GTTGGGGT 1825755 >seq18 Length=1130244 Score = 114 bits (126), Expect = 2e-20 Identities = 335/504 (66%), Gaps = 28/504 (6%) Strand=Plus/Plus Query 116978 ATTTCCCATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGT 117037 |||| | || || || || |||||||| || ||||||||||| || | || || Sbjct 426778 ATTTGCTGTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGCGAGATCA 426837 Query 117038 TTTCCATAAAGTCAAATGGATTCTT---CGCGTTCCAAATGGGTGGCACCCCAACTTGTT 117094 | ||||| |||| || || ||||| ||||| | |||| | | || | || Sbjct 426838 TGTCCATCCAGTCGAACGGGTTCTTGGCCGCGTACAGCTTGGGGG---CGCCGAGGGCTT 426894 Query 117095 TGAGGAGACGATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCG 117153 |||||| ||||||| || | |||||||||||||| |||| |||||||| || Sbjct 426895 CGAGGAGGCGATCCGCGCAGA-ACTCAATGTACTCGCACATGAGGGACGAGTTCATGCCA 426953 Query 117154 ATGAGATTACATGGGAGTGCGTCCAA-GATGAACCCTTTCTCAATCTCAACCGCCTCTTT 117212 ||||| | || ||| || || || ||| ||||||||| | || || || Sbjct 426954 ATGAGCTC-CACGGGCAGGCTCTCACTGACAAACTGCTTCTCAATCGCGACGGCGTCGCC 427012 Query 117213 CACGATGGCGTGGATAGTTTCGGTAGTGGGTCTATT-----ACGCAAAGTCTTGAAGAGC 117267 ||||| ||||||| || | || || | | | ||| || | || | Sbjct 427013 GACGATCTCGTGGATG----CGCTGGTCGGACAACTTGTTGACG---AGCTTCGAGTACA 427065 Query 117268 TC---CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAG 117324 || |||| |||| || ||| ||||| || || || ||||| ||||| || |||||| Sbjct 427066 TCAAGCACG-CAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGAAG 427124 Query 117325 CATAGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAG 117384 | | || ||||| ||||| |||||||| | ||| | || | |||||| ||||| ||| Sbjct 427125 GACAAACCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGGAGCAGAACGACCCCGAG 427184 Query 117385 AAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGAGACTT 117443 |||||||| || || ||| ||||| |||| | || || ||| ||| ||| | ||| Sbjct 427185 AAGAAGATGCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGC-ACGCTT 427243 Query 117444 TGTGTCAAACCATTTCATTGCCCA 117467 |||| |||| |||| ||||| Sbjct 427244 ATTGTCGCACCACTTCAAAGCCCA 427267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977252740440