Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq76 109 4e-19 seq11 91.5 1e-13 >seq76 Length=128956 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| || || ||||| | || | | || |||| |||| ||| || |||||||| Sbjct 44911 TCCTTCTGGATATTGTAGTCGCTCAACG-TGCGGCCATCCTCCAACTGCTTGCCGGCAAA 44969 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||||||||| || | || | ||| |||||||| ||||||||| ||||| Sbjct 44970 GATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTTCTGCTTGACATT 45029 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| || | ||| || |||| || ||||| || || ||||| ||||| || Sbjct 45030 GTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTGAC 45089 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 45090 AAAGATCTGCAT 45101 >seq11 Length=1510989 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||||||||| | || ||| || || ||||| ||||| | || | | || |||| | Sbjct 1070352 AACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACG-TGCGGCCATCTT 1070294 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | ||||| || || ||||| || | || |||||||| |||| | || |||||||| Sbjct 1070293 CGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTT 1070234 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||||||| | ||||| || | ||| || || | || ||||| | Sbjct 1070233 GGATCTTTTGTTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCT 1070174 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || | |||||| || || ||||||||||| Sbjct 1070173 TCCCAGTCAAAGTCTTGACGAAAATCTGCATATT 1070140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631696936968