Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 4e-12 >seq4 Length=2763071 Score = 89.7 bits (98), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || ||||| || || || ||||||||||| || || || || Sbjct 304815 GCTGTCATCACCGTCCCTGCCTATTTCAACGATTCGCAACGTCAAGCGACCAAGGACGCC 304874 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || |||||||| | ||||| |||||||| ||||| ||||| ||||| ||||| || Sbjct 304875 GGTGCCATTGCTGGGTTGAATGTGCTTCGTATCATCAACGAACCCACTGCCGCTGCCATT 304934 Query 550520 GCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGA 550579 || || || | || | | || | | |||| ||||| ||||| || |||| || Sbjct 304935 GCGTACGGTTTGGACA---AGAAGGGTGGCGAACGCAATGTGCTCATTTTCGATTTGGGC 304991 Query 550580 GGT 550582 ||| Sbjct 304992 GGT 304994 Score = 89.7 bits (98), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || ||||| || || || ||||||||||| || || || || Sbjct 356545 GCTGTCATCACCGTCCCTGCCTATTTCAACGATTCGCAACGTCAAGCGACCAAGGACGCC 356486 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || |||||||| | ||||| |||||||| ||||| ||||| ||||| ||||| || Sbjct 356485 GGTGCCATTGCTGGGTTGAATGTGCTTCGTATCATCAACGAACCCACTGCCGCTGCCATT 356426 Query 550520 GCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGA 550579 || || || | || | | || | | |||| ||||| ||||| || |||| || Sbjct 356425 GCGTACGGTTTGGACA---AGAAGGGTGGCGAACGCAATGTGCTCATTTTCGATTTGGGC 356369 Query 550580 GGT 550582 ||| Sbjct 356368 GGT 356366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029270562550690