Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq26 93.3 3e-14 >seq26 Length=915853 Score = 93.3 bits (102), Expect = 3e-14 Identities = 184/271 (68%), Gaps = 1/271 (0%) Strand=Plus/Plus Query 29964 CTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAG 30023 ||| ||||| ||||| |||||| ||||||||||| || | |||||||||| || || Sbjct 835670 CTGGCACGACAGCTCGCCGTCGGCGACGTAAAACTGGCAGAGCATGTGGCACGGCGGCAG 835729 Query 30024 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 30083 ||||||| ||||||||| ||| ||||| || ||| ||||||||| | || | || Sbjct 835730 CGCCATGATGCCCAAGTCAGCGGGATTCCACGCCGACAAGATGATGCGGCGATCGTTCGG 835789 Query 30084 GTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC 30143 ||| | |||| || | | ||| ||||| || || |||| ||| || Sbjct 835790 CGTGTGCTTGATCTTGTAAATGACGTCCGCGAGCTGGTCATGGCCTTGTCCCGTGTAATC 835849 Query 30144 TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCC 30203 | ||| || |||| || || ||||| | |||||| || || || ||||| || Sbjct 835850 CGTGTGCATATCGACGTACGTCGCGCCAAAATGTCGCCACTGAAAGCCATAGACCGGGCC 835909 Query 30204 CAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234 || || || || || | ||| || ||||| Sbjct 835910 CAAATCGCCTTCCTCGCGGTGGACG-AGCCC 835939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615204607013