Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq76 113 3e-20 seq11 87.8 1e-12 seq6 82.4 6e-11 >seq76 Length=128956 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CGATCGTCGTC 48616 |||||||| || || ||| || || |||||||| || | | || | || | || || Sbjct 44893 ACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTC-GCTCAACGTGCGGCCATCCTC 44951 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 ||||||||| |||||||| || ||||| || ||||||| |||| || |||||||| Sbjct 44952 CAACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTG 45011 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| || || ||| | | || || |||| |||||| || | |||||| || || Sbjct 45012 AATCTTCTGCTTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTT 45071 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || | || || ||||| |||||||| ||| Sbjct 45072 GCCGGTGAGGGTCTTGACAAAGATCTGCATGGTG 45105 >seq11 Length=1510989 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CGATCGTCGTC 48616 ||||| || | ||| || ||||| || ||||| || | | || | || | || || Sbjct 1070351 ACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTC-GCTCAACGTGCGGCCATCTTC 1070293 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | |||||| || ||||| |||| ||||| || || | || | ||| |||||||| Sbjct 1070292 GAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 1070233 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||||||||| || | | || || || | |||||| |||| ||| || || || Sbjct 1070232 GATCTTTTGTTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTT 1070173 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || ||||||||||| Sbjct 1070172 CCCAGTCAAAGTCTTGACGAAAATCTGCAT 1070143 >seq6 Length=2426425 Score = 82.4 bits (90), Expect = 6e-11 Identities = 187/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 9076 ATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCG 9135 ||| ||||| || || || ||||| | ||||| || ||| |||||| || Sbjct 1653824 ATTCGTTCAAGGATCAACTGGGCAATGCGATCCCCTGCTTTGACGTGGAAGTCTTCGTTC 1653765 Query 9136 GAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCA 9195 | ||||||||||| || ||||| || || || | |||||| ||||||||||| || || Sbjct 1653764 GCATGATTGAACATGACAACTCCGACATTTCCTCGGTAATCTTCATCGATCACGCCTGCG 1653705 Query 9196 CCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCAT 9255 || || || | || || || | || || || || |||| || | || | | Sbjct 1653704 CCGACATCCAAATGGTTTTTCCACGACAACCCTGACCGAGGGGCGACACGGGCATA-CGT 1653646 Query 9256 CCCACCGGTAATTGCACCCGCAA-GTCGGTCATGACCAGCCCCTTGCCGTGTTTTGGAAT 9314 ||| | ||||||| ||||| ||| ||| | ||||| |||||||| || ||||| Sbjct 1653645 GCCAGGTGGAATTGCAATCGCAATGTCAGTCTTCACCAGGCCCTTGCCATGCGCAGGAAT 1653586 Query 9315 CACGGTGTCGTAGCCGCTCTTGAGATCAAACCCAGCTGC 9353 ||| |||||| |||| | || ||||| ||||| Sbjct 1653585 GACGCATTCGTAGGCGCTGGACAAGTCGAACCCCGCTGC 1653547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935366872363