Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq18 156 8e-33 >seq18 Length=1130244 Score = 156 bits (172), Expect = 8e-33 Identities = 555/859 (65%), Gaps = 29/859 (3%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || || || | ||||| || ||||| ||||| |||| | |||||| | ||||| Sbjct 426785 GTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 426844 Query 47902 GAAGAGGAAGGGGTT---GGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 || ||| ||||| || | || ||| | | ||| | ||| || || Sbjct 426845 CCAGTCGAACGGGTTCTTGGCCGCGT---ACAGCTTGGGGGCGCCGAGGGCTTCGAGGAG 426901 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | |||||||| | |||| ||||| | ||||||||| ||||||||| ||||| Sbjct 426902 GCGATCCGCGCAGAACTCAATGTACTCGCACATGAGGGACGAGTTCATGCCAATGAGCTC 426961 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 |||||||| || ||| ||||| |||||| ||| ||||| || || || |||| Sbjct 426962 CACGGGCAGGCTCTCACTGACAAACTGCTTCTCAATCGCGACGGCGTCGCCGACGATCTC 427021 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 | | ||| || || |||||| | | |||| | || | || ||| ||||| Sbjct 427022 GTGGATGCGCTGGTCGGACAACTTGTTG---ACGAGCTTCGAGTACATCAAGCACGCAAA 427078 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 ||| | ||||| |||||||| || ||||| |||| |||||| | | ||| ||||| Sbjct 427079 GTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGAAGGACAAACCCGGCAT 427138 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 | || | || ||||||||||| || | ||| || || |||||||||||||| || Sbjct 427139 TAGACCTCGCTTCTTGAGCCAGAAGATGGAGCAGAACGACCCCGAGAAGAAGATGCCTTC 427198 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC---GTTCTTGTCTGAGATCCA 48315 || || || || || || | || || | | ||| || ||||| | ||| Sbjct 427199 GACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACGCTTATTGTC---GCACCA 427255 Query 48316 GGAAAGCGCCCAGTCTGCCTT-CTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | |||||| || || | || || || || ||||| || ||||| || | || Sbjct 427256 CTTCAAAGCCCAGGTGGCTTTGCGTC-GGACACAGGGGATCGTGTCAATGGCACGCAGGA 427314 Query 48375 ---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACA 48428 | | ||| || || ||| | || || |||| ||| | ||||| Sbjct 427315 CCCGGTCCTT---TTCCGTGGCATCCTTGATGTACGTGTCGATGAGGAGC---GAGTACA 427368 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||||||| | ||||| || || |||||||||||||||||| || ||| ||| || Sbjct 427369 CTTCAGAGTGAATGTTCTCAATGGCAATCTGGAACCCGTAGAAGCACCGGGCTTCAGGCA 427428 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 | || ||||| || || || | || || || || || ||||| || || | Sbjct 427429 CTTGTACTTCATTGCTAAAGTTCATCGCGAGGTTTTCGTTCACGATCCCGTCACTCGCGG 427488 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608 ||||||| || || ||||| | | ||| || ||||||| ||| || |||| Sbjct 427489 CAAAGAACGCCAGCACATGCGTGATGAAGAAACGTTCGTTGTCGGTAAGCTTGACCCAGT 427548 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | || || | ||| ||| | |||||| | ||||||||| ||| || |||| Sbjct 427549 CGCGTTGATCGTGCACCAAGTCTAGCTCTTCCGCTGTCCAGAAGCTCGCTTCCGCCTTTT 427608 Query 48669 TGTACATGCCCCATATGTC 48687 ||||||| |||| | ||| Sbjct 427609 TGTACATCTCCCACACGTC 427627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931527199159040