Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq18 138 2e-27 >seq18 Length=1130244 Score = 138 bits (152), Expect = 2e-27 Identities = 315/462 (68%), Gaps = 14/462 (3%) Strand=Plus/Minus Query 25589 TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648 ||| | | ||| |||| |||||||| || ||| || || |||||||| || || ||| Sbjct 427512 TCACGCATGTGCTGGCGTTCTTTGCCGCGAGTGACGGGATCGTGAACGAAAACCTC-GCG 427454 Query 25649 A-GAGATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 | || || | || ||||| || || | || || || ||| |||||||| |||||||| Sbjct 427453 ATGAACTTTAGCAATGAAGTACAAGTGCCTGAAGCCCG-GTGCTTCTACGGGTTCCAGAT 427395 Query 25707 GGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTAC 25763 ||||| || || | |||||||| ||||| | ||| || || |||||||| | Sbjct 427394 TGCCATTGAGAACATTCACTCTGAAGTGTACTC---GCTCCTCATCGACACGTACATCAA 427338 Query 25764 AGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGA 25822 || | | | || | || ||| | | ||||||| || ||| || ||| | || Sbjct 427337 GGATGCCACGGAAAAGGACCGGGTCCTGCGTGCCATTGA-CACGATCCCCTGTGTCCGAC 427279 Query 25823 GGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGC 25882 | || || ||||| |||||||| | ||| || | ||| | | | || || Sbjct 427278 GCAAAGCCACCTGGGCTTTGAAGTGGTGCGACAATAAGCGTGCTGCCTACGCTGAACGTA 427219 Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTC 25941 | || |||||||| ||||| || |||||||| ||| || ||||| ||| |||||||| Sbjct 427218 TCGTTGCCTTTGCCGCTGTCGAAGGCATCTTCTTCTCGGGGTCGTTCTGCT-CCATCTTC 427160 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||||||||| || || ||||| || ||| ||| || ||||| ||||| | Sbjct 427159 TGGCTCAAGAAGCGAGGTCTAATGCCGGGTTTGTCCTTCTCGAACGAACTCATTTCTCGC 427100 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 ||||| ||||| ||| | || ||||| ||| || | ||| || Sbjct 427099 GACGAAGGTCTGCACTGCGACTTTGCGTGCTTGATGTACTCG 427058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839215320640