Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq18 118 1e-21 seq1 111 2e-19 >seq18 Length=1130244 Score = 118 bits (130), Expect = 1e-21 Identities = 346/521 (66%), Gaps = 28/521 (5%) Strand=Plus/Minus Query 65035 TGGGCAATGAAATGGTTTGACACAAAGTCTCGCT-CCTTCGCCGAGCGCCTTTTTGCGTT 65093 ||||| |||| |||| |||| ||| | ||| ||| ||| || || | |||| || Sbjct 427267 TGGGCTTTGAAGTGGTGCGACAATAAGCGT-GCTGCCTACGCTGAACGTATCGTTGCCTT 427209 Query 65094 TGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAA 65153 ||| ||| || || ||||||||||| ||||| |||||| | || | ||| | ||||| Sbjct 427208 TGCCGCTGTCGAAGGCATCTTCTTCTCGGGGTCGTTCTGCTCCATCTTCTGGCTCAAGAA 427149 Query 65154 GCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCT 65213 ||| ||||| ||||| || | | |||||| || ||||| ||||| || || || ||||| Sbjct 427148 GCGAGGTCTAATGCCGGGTTTGTCCTTCTCGAACGAACTCATTTCTCGCGACGAAGGTCT 427089 Query 65214 CCACCAGGAGTTTGCCGTG---GAGCTCTTCAAGACTTTGCGT-----AATAGACCCACT 65265 ||| || |||| |||| || | || | || ||| | | | || || Sbjct 427088 GCACTGCGACTTTG-CGTGCTTGATGTACTCGAAGCT---CGTCAACAAGTTGTCCGACC 427033 Query 65266 ACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATC-TT 65324 | || ||||||| ||||| || || || | ||||||||| ||| || | Sbjct 427032 AGCG----CATCCACGAGATCGTCGGCGACGCCGTCGCGATTGAGAAGCAGTTTGTCAGT 426977 Query 65325 GGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGA 65384 | || ||| || | ||||| || |||||||| |||| |||||||||||| Sbjct 426976 GAGAGCCTGCCCGTG-GAGCTCATTGGCATGAACTCGTCCCTCATGTGCGAGTACATTGA 426918 Query 65385 GTATGTG-TCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTTGGAACGCG---A 65440 || | || ||||||| |||||| || | || | | |||| | ||||| | Sbjct 426917 GT-TCTGCGCGGATCGCCTCCTCGAAGCCCTCGGCG---CCCCCAAGCTGTACGCGGCCA 426862 Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 |||| || || |||| ||||| | || || | || ||||||||||| || |||| Sbjct 426861 AGAACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTTTTCGAGA 426802 Query 65501 AGCGAGTTGGGGACTATGGGAAATTGGATGATGATGTTGGC 65541 |||| || || || || | |||| | || || |||| || Sbjct 426801 AGCGCGTCGGCGAGTACAGCAAATCTGGTGTTGGTGTTAGC 426761 >seq1 Length=2817317 Score = 111 bits (122), Expect = 2e-19 Identities = 281/420 (67%), Gaps = 7/420 (2%) Strand=Plus/Minus Query 75219 ACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGA 75278 ||||| | ||||| || || | ||||||||| || ||||| || || |||||| | Sbjct 1825747 ACATGATTATGCGTGTGGCTGTGGGCATCCACAAAGATGACATCGAGTCCGTCTTGACCA 1825688 Query 75279 CATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTTCAATGCT 75337 | ||||| | ||||||||| ||| || | ||||||||||| || | |||||||| Sbjct 1825687 CCTACGAGTACATGTCCCAATTGTACTTT-ACCCACGCAACACCCACGTTGTTCAATGCC 1825629 Query 75338 GGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATC 75397 || || || | || || | || ||||| | | ||| || || ||||| || Sbjct 1825628 GGCACGCCGCGCCCTCAACTCTCGTCGTGCTTTTTGCTGTCCATGAAAGACGACTCGATT 1825569 Query 75398 AACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATT 75457 | || || || | || | | | || ||| || || ||||||||||| || || Sbjct 1825568 GAAGGCATTTACGACACATTGAAAAACTGCGCGTGCATTTCCAAGTGGGCTGGTGGAATC 1825509 Query 75458 GGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAATGGTCA 75516 || || ||||||| | | | |||| || | || ||||| || || || || Sbjct 1825508 GGTGTGAACATCCACAACATCCGCGCCACGAACAGCT-ACATTCGAGGAACGAACGGGTC 1825450 Query 75517 ATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCA 75576 || | || || ||||| ||||||||||| || |||| ||| || || ||||| | || Sbjct 1825449 TTCGAACGGGATCATTCCCATGCTTCGCGTGTTCAACGACACGGCCCGTTATGTCGACCA 1825390 Query 75577 A-GCG--GGGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATAT 75633 | ||| || || |||||||| | || | ||||||||||| ||||| || || || Sbjct 1825389 AGGCGGTGGAAAGCGAAAGGGGTCGTTTGCCATGTACTTGGAACCTTGGCACGCTGACAT 1825330 Score = 82.4 bits (90), Expect = 9e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 76757 ACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGC-TT 76815 || ||||||||||||||| || | || | ||| |||| || || || || ||| || Sbjct 1824170 ACTGTGTGGGAAATCAAGCAAAAGGTCGTGCTCGACCTGGCTGCCGACCGAGG-CGCATT 1824112 Query 76816 CATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTC 76875 ||| ||||| ||| ||||| | ||| | | |||| || ||||||| | Sbjct 1824111 CATCTGCCAAAGCCAATCCATGAACGTGCACATCGCAGACCCAAGCATCAGCAAGCTCAC 1824052 Query 76876 TTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCGATC 76935 || ||||| | ||||||||||| | |||||||| ||||| ||||| || ||||| || Sbjct 1824051 GTCGATGCACTTTTACGCGTGGAAGCGTGGGCTCAAGACCGGCATGTATTACCTCCGCTC 1823992 Query 76936 AAAGGCGAAAGCCCGACCAATTCAGTTCA 76964 | |||||||| | || ||||||| Sbjct 1823991 ACGCCCGAAAGCCGATGCGATCCAGTTCA 1823963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566013125280