Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10 105 2e-17 seq46 91.5 4e-13 seq164 87.8 5e-12 >seq10 Length=1522286 Score = 105 bits (116), Expect = 2e-17 Identities = 176/250 (70%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || ||||| || | ||| ||||||||||||| || |||||||| | |||| Sbjct 1446916 GTCTTCACGGCAGTATCGATCAAACCTTCACGACCACCCATGGCGTGGAAGAAAAACTCT 1446857 Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738 | ||| ||| | |||| | | ||| | || || || || |||| ||| ||| Sbjct 1446856 TGCGG-CGTCAACCCCTTCAAGTACGAGTTTTCGACAAACCCTCGCGACTCTGGCCCCAA 1446798 Query 302739 GTCGAACTTG--GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTT 302796 |||| |||| |||| || ||||| || | || | | || || || |||||||| Sbjct 1446797 GTCGTCCTTGCCGTAA--TGCGGCAGTGTGCGGTGGTGGAATCCATACGGAATACGCTTC 1446740 Query 302797 CCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCC 302856 || || ||||| |||||||| | || | ||| |||||||||||||| || | ||| Sbjct 1446739 CCTTCGACGTTTTGCTGTCCGACACAAGCAATAATCTGCGAAATATTCAAGTACGACCCC 1446680 Query 302857 TTGGAGCCAG 302866 ||||| |||| Sbjct 1446679 TTGGACCCAG 1446670 >seq46 Length=439711 Score = 91.5 bits (100), Expect = 4e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 410489 CCGCGTGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCC 410548 ||||||| |||||||| |||||| | ||||||||||| ||| ||||||||||||||||| Sbjct 65713 CCGCGTGGCGCAATGGCTAGCGTTTCGGACTTCTAATCCGGAGGTTGCGGGTTCGAGTCC 65654 Query 410549 CGTCGTGG 410556 |||||||| Sbjct 65653 CGTCGTGG 65646 >seq164 Length=8440 Score = 87.8 bits (96), Expect = 5e-12 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 410485 GTGCCCGCGTGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGA 410544 |||| || || ||||||||||||||| |||||||| ||||||| ||||||||||||| Sbjct 1736 GTGCACGGCTGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGA 1677 Query 410545 GTCCCGTCGT-GGGTAAtttttttAAT 410570 |||||| ||| | ||||| ||||||| Sbjct 1676 GTCCCG-CGTCGTGTAATAGTTTTAAT 1651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471808529464097