Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq18 219 5e-51 seq1 159 4e-33 seq23 100 3e-15 seq10 96.9 4e-14 seq16 95.1 1e-13 >seq18 Length=1130244 Score = 219 bits (242), Expect = 5e-51 Identities = 234/308 (76%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||| Sbjct 426785 GTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 426844 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 ||| ||||||||| | | ||| |||| | ||||| | |||| ||||| Sbjct 426845 CCAGTCGAACGGGTTCTTGGCCGCGTACAGCTTGGGGGCGCCGAGGGCTTCGAGGAGGCG 426904 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 || ||| ||||| ||||||| |||||||||| | ||||||||| |||||| |||| Sbjct 426905 ATCCGCGCAGAACTCAATGTACTCGCACATGAGGGACGAGTTCATGCCAATGAGCTCCAC 426964 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATC---TG 868935 ||||| ||| || ||||||| ||||| ||| ||||||| ||| ||| |||| || Sbjct 426965 GGGCAGGCTCTCACTGACAAACTGCTTCTCAATCGCGACGGCGTCGCCGACGATCTCGTG 427024 Query 868936 CCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 868995 || || ||||| | | ||||||||||||| ||| ||| | || ||| |||||||| Sbjct 427025 GATGCGCTGGTCGGACAA---CTTGTTGACGAGCTTCGAGTACATCAAGCACGCAAAGTC 427081 Query 868996 GCAGTGCA 869003 |||||||| Sbjct 427082 GCAGTGCA 427089 Score = 140 bits (154), Expect = 4e-27 Identities = 201/281 (72%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||||||| || | |||||| |||| | || ||||| || || ||||| Sbjct 427091 ACCTTCGTCGCGAGAAATGAGTTCGTTCGAGAAGGACAAACCCGGCATTAGACCTCGCTT 427150 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| |||||| |||||||| |||||||| ||||| |||||||| Sbjct 427151 CTTGAGCCAGAAGATGGAGCAGAACGACCCCGAGAAGAAGATGCCTTCGACAGCGGCAAA 427210 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | | || || || || ||| | | || |||| | |||||||| ||||| Sbjct 427211 GGCAACGATACGTTCAGCGTAGG---CAGCACGCTTATTGTCGCACCACTTCAAAGCCCA 427267 Query 869359 GTCGGCCTTTTTCCTC--ACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 | ||| ||| | || || | || | |||||| ||||| || | || |||||||| Sbjct 427268 GGTGGC--TTTGCGTCGGACACAGGGGATCGTGTCAATGGCACGCAGGACCCGGTCCTTT 427325 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 || | | ||||||| || |||||||| |||||||| || Sbjct 427326 TCCGTGGCATCCTTGATGTACGTGTCGATGAGGAGCGAGTA 427366 Score = 127 bits (140), Expect = 2e-23 Identities = 210/298 (70%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| |||||||| ||||| |||||||| ||||| ||| || | || | |||||| Sbjct 427374 GAGTGAATGTTCTCAATGGCAATCTGGAACCCGTAGAAGCACCGGGCTTCAGGCACTTGT 427433 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || || | || || ||||| ||| |||||| ||||| || ||||| || Sbjct 427434 ACTTCATTGCTAAAGTTCATCGCGAGGTTTTCGTTCACGATCCCGTCACTCGCGGCAAAG 427493 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || ||||| || ||| |||| ||| || |||| |||| | ||| ||||||| | || Sbjct 427494 AACGCCAGCACATGCGTGATGAAGAAACGTTCGTTGTCGGTAAGCTTGACCCAGTCG-CG 427552 Query 869813 GTG-TCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 || ||| || | || || | ||| || || ||||||| || || |||||||||| Sbjct 427553 TTGATCGTGCACCAAG-TCTAGCTCTTCCGCTGTCCAGAAGCTCGCTTCCGCCTTTTTGT 427611 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 |||||||||| || | || |||| |||||||| || || | ||| || || || Sbjct 427612 ACATCTCCCACACGTCGGCGTGTTGGATCGGGAAGAGCACGAACCTGTTCGGATTTTC 427669 >seq1 Length=2817317 Score = 159 bits (176), Expect = 4e-33 Identities = 216/301 (72%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| || || ||||||||||| || ||||| |||||||| | || ||||| || Sbjct 1825390 TGGTCGACATAACGGGCCGTGTCGTTGAACACGCGAAGCATGGGAATGATCCCGTTCGAA 1825449 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||||| || || | |||| | | |||||| | ||||| | | ||| Sbjct 1825450 GACCCGTTCGTTCCTCGAATGTAGCTGTTCGTGGCGCGGATGTTGTGGATGTTCACACCG 1825509 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || ||| ||||||| ||| |||||| | ||| | |||||||| ||||| || Sbjct 1825510 ATTCCACCAGCCCACTTGGAAATGCACGCGCAGTTTTTCAATGTGTCGTAAATGCCTTCA 1825569 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||||||| | |||||| || | ||||||||||||| ||| ||| ||| ||||||| Sbjct 1825570 ATCGAGTCGTCTTTCATGGACAGCAAAAAGCACGACGAGAGTTGAGGGCGCGGCGTGCCG 1825629 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 || ||||| | |||||| || || ||| || || | |||||| ||||||||| Sbjct 1825630 GCATTGAACAACGTGGGTGTTGCGTGGGTAAAGTACAATTGGGACATGTACTCGTAGGTG 1825689 Query 1630366 G 1630366 | Sbjct 1825690 G 1825690 >seq23 Length=920215 Score = 100 bits (110), Expect = 3e-15 Identities = 160/224 (71%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGT-GCCG 1254401 || |||||| |||||| | | || || ||||||||||| || || ||||| | | | Sbjct 134851 GCTTGGCCAACTCGCCGGGAAGCATGAGACGCACGGCGGTTTGAATTTCGCGAGACGACA 134910 Query 1254402 A--TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | ||| || |||||| || | || ||| || || | ||||||| || | Sbjct 134911 AAGTCGACTT---CTTGTTGTAGCGGCTGAGCTTGCCAGCTTCCGACGCGATGCGTTCAA 134967 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGTCG 1254518 || ||||||| ||||||||||||| ||||| | | | ||||||||||| ||| Sbjct 134968 AGATATCGTTGATGAACGAGTTCATGATGGACAT-GCCGCGCTTGGAGATGCCGGTTTCG 135026 Query 1254519 GGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||||||| ||||| | ||||||||||||| | | ||||||||| Sbjct 135027 GGGTGCACTTGCTTCAACACCTTGTAGATGTAGGTCGAGTACGA 135070 >seq10 Length=1522286 Score = 96.9 bits (106), Expect = 4e-14 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 507714 TCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGC 507773 ||||| | | |||||| | | ||||||||||| |||||||||||||| |||||| ||| Sbjct 1445626 TCAACATCTCGGTCACGACCCCGTACAACGCCGATTTTGACGGCGACGAAATGAACTTGC 1445685 Query 507774 ACGTGCCCCAGTCCGAGACGGCGCGCGCCGA 507804 ||||||| |||||| |||||||||||| || Sbjct 1445686 ACGTGCCGCAGTCCATGACGGCGCGCGCAGA 1445716 Score = 87.8 bits (96), Expect = 2e-11 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| || | | || |||||||| ||||| ||||| ||||| | ||| Sbjct 522766 GCTTGGCCAGTTCACCAGGAAGCATAAGGCGCACTGCGGTTTGGATTTCGCGGGA--CGA 522823 Query 1254403 TCGTGTTGCG--CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 || | |||||| || | || |||||| || | | ||||| |||| Sbjct 522824 CAAAGTAGACTTCTTGTTGTAGCGGCTCAACTTGCCGGCTTCCGACGCAATGCGTTCGAA 522883 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGTCGG 1254519 || ||||||| ||||||||||| | ||||| | | | |||||||| || || | Sbjct 522884 GATATCGTTGATGAACGAGTTCATAATGGACAT-GCCGCGCTTGGAGATACCGGTTTCAG 522942 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||| || ||||| | ||||||||||||| | | ||||||||| Sbjct 522943 GGTGAACTTGCTTCAACACCTTGTAGATGTAGGTCGAGTACGA 522985 >seq16 Length=1248631 Score = 95.1 bits (104), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||| || | | || |||||||||||||| ||||| ||||| | | ||| Sbjct 62539 GCCAATTCACCAGGAAGCATGAGGCGCACGGCGGTTTGGATTTCGCGGGACGACAAAGTG 62480 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| || | || ||| || || | ||||||| || | |||||| Sbjct 62479 GACTTCTTGTTGTAGCGGCTGAGCTTGCCAGCTTCCGACGCGATGCGTTCAAAGATGTCG 62420 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGTCGGGGTGCAC 1254526 |||| ||||||||||||| |||||| | | | |||||||| || ||||||||||| Sbjct 62419 TTGATGAACGAGTTCATGATCGACAT-GCCGCGCTTGGAGATACCGGTTTCGGGGTGCAC 62361 Query 1254527 CTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||| | ||| ||||| ||| | | ||||||||| Sbjct 62360 TTGCTTCAACACTTTGTAAATGTAGGTCGAGTACGA 62325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107099726887477