Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq27 123 2e-23 seq76 122 8e-23 seq11 109 5e-19 >seq27 Length=843962 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| ||||| | || ||| | || |||||||| || ||| | || || ||| | Sbjct 479752 ACCATGCAAATCTTCGTCAAGACGTTGACGGGTAAAACCATCACGTTGGATGTGGAACCA 479811 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||| | | || | || || ||||||||||| ||||| ||||| || || || ||| Sbjct 479812 TCCGACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCCCCTGAT 479871 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||||| | ||||||||||| || || |||| ||| | | || || || Sbjct 479872 CAGCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACGTTGAGCGACTAC 479931 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||||| |||||||||||||| | ||||||||| | || |||| || || || Sbjct 479932 AACATCCAAAAGGAATCGACCTTGCACTTGGTGCTCCGCCTGCGTGGTGGTGG 479984 >seq76 Length=128956 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || ||||| || || ||||||||||| || || | Sbjct 45104 ACCATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATTACGCTCGACGTGGAGCCG 45045 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||| | | || | || || || ||||| || ||||| ||||| || ||||| ||| Sbjct 45044 TCCGACTCGATTGACAATGTCAAGCAGAAGATTCAGGACAAGGAAGGGATTCCTCCGGAT 44985 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||||| | ||||||||||| || ||| |||||||| | | || || || Sbjct 44984 CAGCAACGACTCATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGCACGTTGAGCGACTAC 44925 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| ||||| || || ||||| | || | ||||| || Sbjct 44924 AATATCCAGAAGGAGTCGACCCTGCATTTGGTTCTTCGCCTCCGCGGTGG 44875 >seq11 Length=1510989 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || || || || ||||| || || || | | Sbjct 1070143 ATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGCTGGACGTGGAGCCTTCG 1070202 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || |||||||||||||||||||| ||||| || || || || || Sbjct 1070203 GACTCGATCGACAACGTCAAACAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 1070262 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || ||||| || ||| | | || || || ||| Sbjct 1070263 CAGCGCTTGATCTTTGCGGGCAAGCAGCTCGAAGATGGCCGCACGTTGAGCGACTACAAC 1070322 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || |||||||||||||| | |||||||| | || |||| || || || Sbjct 1070323 ATCCAAAAGGAATCGACGTTGCACTTGGTTCTCCGCCTGCGTGGGGGTGG 1070372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894894990680