Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq18 232 1e-54 seq1 187 4e-41 seq16 138 2e-26 seq23 125 1e-22 seq10 100 5e-15 seq45 86.0 1e-10 >seq18 Length=1130244 Score = 232 bits (256), Expect = 1e-54 Identities = 242/315 (77%), Gaps = 12/315 (4%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 |||||||| |||||| ||||||||||||||||||||||| ||||||||||| |||||| Sbjct 426786 TACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 426845 Query 793968 CACGGGAACGGGTT---GGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGG 794024 || ||||||||| ||||| ||| |||| | ||||| | | || ||| Sbjct 426846 CAGTCGAACGGGTTCTTGGCCGC---GTACAGCTTGGGGGCGCCGAGGGCTTCGAGGAGG 426902 Query 794025 CGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCC 794084 || || ||| ||| |||||||||| ||||||||||| | ||||||||| |||||| || Sbjct 426903 CGATCCGCGCAGAACTCAATGTACTCGCACATGAGGGACGAGTTCATGCCAATGAGCTCC 426962 Query 794085 ACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATC--- 794141 |||||||| ||| |||||||||| ||||| ||| ||||||| ||| || |||| Sbjct 426963 ACGGGCAGGCTCTCACTGACAAACTGCTTCTCAATCGCGACGGCGTCGCCGACGATCTCG 427022 Query 794142 TGCCTGGGCACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAG 794201 || || || ||||||| | ||||| ||||||| ||| ||| | || ||| |||||| Sbjct 427023 TGGATGCGCTGGTCGGACAA---CTTGTTGACGAGCTTCGAGTACATCAAGCACGCAAAG 427079 Query 794202 TCGCAATGCAGACCT 794216 ||||| ||||||||| Sbjct 427080 TCGCAGTGCAGACCT 427094 Score = 170 bits (188), Expect = 3e-36 Identities = 238/330 (72%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||||||| || | |||||| ||| | | || ||||| || || ||||| Sbjct 427091 ACCTTCGTCGCGAGAAATGAGTTCGTTCGAGAAGGACAAACCCGGCATTAGACCTCGCTT 427150 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||||| |||||||| |||||||| ||||| |||||||| Sbjct 427151 CTTGAGCCAGAAGATGGAGCAGAACGACCCCGAGAAGAAGATGCCTTCGACAGCGGCAAA 427210 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAG-GCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | | |||| || || || || ||| | || |||| | |||||||| |||| Sbjct 427211 GGCAACGATACGTTCAGC----GTAGGCAGCACGCTTATTGTCGCACCACTTCAAAGCCC 427266 Query 794519 ACTCTGCCTTTTTCCTC--ACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 | || ||| | || || |||| | |||||| ||||| || | || ||||||| Sbjct 427267 AGGTGGC--TTTGCGTCGGACACAGGGGATCGTGTCAATGGCACGCAGGACCCGGTCCTT 427324 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || | ||||||| ||| |||||||||||||||||||| || ||||| ||||| Sbjct 427325 TTCCGTGGCATCCTTGATGTACGTGTCGATGAGGAGCGAGTACACTTCAGAGTGAATGTT 427384 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || ||||| |||||||| || || ||||| Sbjct 427385 CTCAATGGCAATCTGGAACCCGTAGAAGCA 427414 Score = 96.9 bits (106), Expect = 5e-14 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || |||| ||| || || ||||| || || || | ||| || ||||| || | Sbjct 427410 AAGCACCGGGCTTCAGGCACTTGTACTTCATTGCTAAAGTTCATCGCGAGGTTTTCGTTC 427469 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||| ||||| || ||||| || || || || || ||| |||| ||| ||| |||| | Sbjct 427470 ACGATCCCGTCACTCGCGGCAAAGAACGCCAGCACATGCGTGATGAAGAAACGTTCGTTG 427529 Query 796261 TCGCTGAGCGAGACCCAGTGGACCGTG-TCG-GCGCCGAGGTCGACCTCCTCGGCGGTCC 796318 ||| | ||| |||||||| | | || ||| || || || || | ||| || || |||| Sbjct 427530 TCGGTAAGCTTGACCCAGTCG-CGTTGATCGTGCACCAAG-TCTAGCTCTTCCGCTGTCC 427587 Query 796319 AAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCA 796352 | ||| || || |||||||||||||||||||| Sbjct 427588 AGAAGCTCGCTTCCGCCTTTTTGTACATCTCCCA 427621 >seq1 Length=2817317 Score = 187 bits (206), Expect = 4e-41 Identities = 222/301 (74%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||||||||| || ||||||||||| || ||||| |||||||| | | ||||| || Sbjct 1825390 TGGTCGACATAACGGGCCGTGTCGTTGAACACGCGAAGCATGGGAATGATCCCGTTCGAA 1825449 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||||| || || | |||| | || |||||| | ||||| | | ||| Sbjct 1825450 GACCCGTTCGTTCCTCGAATGTAGCTGTTCGTGGCGCGGATGTTGTGGATGTTCACACCG 1825509 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || || ||| |||||| ||| |||||| ||||||| || ||||| ||||| || Sbjct 1825510 ATTCCACCAGCCCACTTGGAAATGCACGCGCAGTTTTTCAATGTGTCGTAAATGCCTTCA 1825569 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||||||| | |||||| || || ||||||||||||| ||| ||||||| ||||||| Sbjct 1825570 ATCGAGTCGTCTTTCATGGACAGCAAAAAGCACGACGAGAGTTGAGGGCGCGGCGTGCCG 1825629 Query 2073781 GCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGTG 2073840 |||||||| | |||||| || || || | || |||||||||| |||||||||| Sbjct 1825630 GCATTGAACAACGTGGGTGTTGCGTGGGTAAAGTACAATTGGGACATGTACTCGTAGGTG 1825689 Query 2073841 G 2073841 | Sbjct 1825690 G 1825690 >seq16 Length=1248631 Score = 138 bits (152), Expect = 2e-26 Identities = 186/259 (72%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || || || || ||||||||| | |||| ||| || | | Sbjct 62583 TGAACTTGGTCACGGCCTTCGTGCCTTCAGACACGGCGTGCTTAGCCAATTCACCAGGAA 62524 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || |||||||||||||| ||||| ||||||| | ||| |||||| || Sbjct 62523 GCATGAGGCGCACGGCGGTTTGGATTTCGCGGGACGACAAAGTGGACTTCTTGTTGTAGC 62464 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||| || || | ||||||| || | |||||||||| |||||||||| Sbjct 62463 GGCTGAGCTTGCCAGCTTCCGACGCGATGCGTTCAAAGATGTCGTTGATGAACGAGTTCA 62404 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| |||||||| || ||||||||||| ||||| | ||| |||| Sbjct 62403 TGATCGACATGCCGCGCTTGGAGATACCGGTTTCGGGGTGCACTTGCTTCAACACTTTGT 62344 Query 1485710 AAACAAAGGACGAGTACGA 1485728 ||| ||| ||||||||| Sbjct 62343 AAATGTAGGTCGAGTACGA 62325 >seq23 Length=920215 Score = 125 bits (138), Expect = 1e-22 Identities = 185/259 (71%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || ||||| || || || || ||||||||| |||||| |||||| | | | Sbjct 134815 ACTTGGTCACAGCCTTCGTGCCTTCCGACACGGCGTGCTTGGCCAACTCGCCGGGAAGCA 134874 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGT-GCCGA--TCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||||||||| || || ||||| | | | | ||| || |||||| || Sbjct 134875 TGAGACGCACGGCGGTTTGAATTTCGCGAGACGACAAAGTCGACTT---CTTGTTGTAGC 134931 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||| || || | ||||||| || | || ||||||| |||||||||| Sbjct 134932 GGCTGAGCTTGCCAGCTTCCGACGCGATGCGTTCAAAGATATCGTTGATGAACGAGTTCA 134991 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||||||||||| ||||||||||| ||||| | |||||||| Sbjct 134992 TGATGGACATGCCGCGCTTGGAGATGCCGGTTTCGGGGTGCACTTGCTTCAACACCTTGT 135051 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 135052 AGATGTAGGTCGAGTACGA 135070 >seq10 Length=1522286 Score = 100 bits (110), Expect = 5e-15 Identities = 158/224 (71%), Gaps = 12/224 (5%) Strand=Plus/Plus Query 429518 CGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCC 429577 ||| |||| ||||||||||||| |||| || |||| |||| | | ||||| ||||| Sbjct 1445501 CGGCTGGATCGTCGAGCGCCACTTGCGAGACGACGACTACGTGTTGTTCAACCGTCAGCC 1445560 Query 429578 GTCGCTCCACATGGGGTCGAT----GCTCAACCA--CAAGGTGGTGCCCATGCCCGGTCG 429631 | | |||| | | || || || | | ||| ||| | | | ||||| Sbjct 1445561 GAGTTTACACAAGATGAGTATCATGGCCCATCGAGTCAAAGTGCTA-----GACTGGTCG 1445615 Query 429632 CACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGA 429691 || ||||| |||||| | | || ||| | | ||||||||||| |||||||||||||| Sbjct 1445616 -ACGTTCCGCCTCAACATCTCGGTCACGACCCCGTACAACGCCGATTTTGACGGCGACGA 1445674 Query 429692 GATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAG 429735 |||||| |||||||||| ||||| || ||| ||||| |||| Sbjct 1445675 AATGAACTTGCACGTGCCGCAGTCCATGACGGCGCGCGCAGAAG 1445718 >seq45 Length=372636 Score = 86.0 bits (94), Expect = 1e-10 Identities = 138/196 (70%), Gaps = 13/196 (7%) Strand=Plus/Minus Query 1249605 TCGTCCACCGCGATCTCAAGAGCAGCAACCTGCTGGTCGACGACGAGTACAATGTCAAGG 1249664 || |||| ||||| |||||||||| ||| | || | |||||| || | | | | | Sbjct 190658 TCATCCATCGCGACCTCAAGAGCAAAAACATCCTCCTGAACGACGCGTTCGTGGCCCACG 190599 Query 1249665 TGGCCGACTTTGGTCTCGCGCG-CATCCGCGAGGACA----ATGCCACCATGACG---CG 1249716 || ||||||||||| | |||| || ||| || |||| ||||||| || Sbjct 190598 TGACCGACTTTGGTGTATCGCGACA-----GAGTTCATCCGATGCGCTCATGACGGCGCG 190544 Query 1249717 GTGCGGCACGCCGGCGTGGACGGCGCCCGAGGTCATCCGCGGCGAGCGCTACGACGAGCG 1249776 | ||||||| ||||||||| |||||||||||| |||||||||| | ||| | | | Sbjct 190543 GGTCGGCACGTCGGCGTGGATTGCGCCCGAGGTCCTCCGCGGCGAAAGATACACCCACCA 190484 Query 1249777 CGCCGACGTCTACTCG 1249792 |||||| | |||||| Sbjct 190483 AGCCGACTTGTACTCG 190468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916195233836159