Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq76 114 8e-21 seq11 93.3 3e-14 >seq76 Length=128956 Score = 114 bits (126), Expect = 8e-21 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || ||||| | |||| |||| |||| ||||| ||||| || Sbjct 44910 CTCCTTCTGGATATTGTAGTCGCTCAACGTGCGGCCATCCTCCAACTGCTTGCCGGCAAA 44969 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| ||||||||||| || | || | ||| |||||||| | || || || ||||| Sbjct 44970 GATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTTCTGCTTGACATT 45029 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||||| || | ||| || || | || |||||||| || ||||||||||| || Sbjct 45030 GTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTGAC 45089 Query 34966 AAAGATCTGCATG 34978 ||||||||||||| Sbjct 45090 AAAGATCTGCATG 45102 >seq11 Length=1510989 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || ||||| ||||| | |||| |||| || || ||||| || || ||| Sbjct 1070333 TCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCGAGCTGCTTGCCCGCAAAG 1070274 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || |||||||| |||| | || |||||||| | || |||||||||||| Sbjct 1070273 ATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGTTTGACGTTG 1070214 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | ||||| || | ||| || || | || |||||||| || || | ||||| || Sbjct 1070213 TCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTCCCAGTCAAAGTCTTGACG 1070154 Query 34967 AAGATCTGCAT 34977 || |||||||| Sbjct 1070153 AAAATCTGCAT 1070143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690890727739