Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq11 100 2e-16 seq27 82.4 6e-11 >seq11 Length=1510989 Score = 100 bits (110), Expect = 2e-16 Identities = 165/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 107547 AGGTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAAC 107605 ||||| ||| ||||| ||||| ||||| ||||| || || || ||||| || | || Sbjct 1070133 AGGTTGAAATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGCTGGACGT 1070192 Query 107606 GGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCC 107665 |||| || || | ||| | | || ||||||||||| || || |||||| | || Sbjct 1070193 GGAGCCTTCGGACTCGATCGACAACGTCAAACAAAAGATCCAAGACAAGGAAGGCATCCC 1070252 Query 107666 CGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGC 107725 || |||||| | | || | |||||| || ||||| || || | | || || Sbjct 1070253 GCCTGACCAGCAGCGCTTGATCTTTGCGGGCAAGCAGCTCGAAGATGGCCGCACGTTGAG 1070312 Query 107726 GGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||| |||||||| || ||||||||| |||| | | |||| ||||| Sbjct 1070313 CGACTACAACATCCAAAAGGAATCGACGTTGCACTTGGTTCTCCGCCTGCGTGGGGG 1070369 >seq27 Length=843962 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || || || || |||||||| || | || ||| | | Sbjct 479755 ATGCAAATCTTCGTCAAGACGTTGACGGGTAAAACCATCACGTTGGATGTGGAACCATCC 479814 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || | ||| | | || || |||||||| || || |||||| | ||| |||||| Sbjct 479815 GACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCAG 479874 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | || || | ||| || || || |||| || | | || || ||||||||| Sbjct 479875 CAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACGTTGAGCGACTACAAC 479934 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||| || || |||||| ||||| Sbjct 479935 ATCCAAAAGGAATCGACCTTGCACTTGGTG 479964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398874461709409