Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq21 105 5e-17 >seq21 Length=1304294 Score = 105 bits (116), Expect = 5e-17 Identities = 434/674 (64%), Gaps = 18/674 (3%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || || || || || || ||||| || ||||| | |||||||| | ||| || | || Sbjct 1165150 ACCAGTCGGTTGTCGAAGTCTTCGCCCCCCAAGTGCGTATTTCCCGCCGTCGCCTTGACC 1165209 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | |||| || ||||| | | || || | |||||| || || || |||| || Sbjct 1165210 TCAAAAATGCCCTCTTCGATCGTCAGCAGCGACACATCAAATGTGCCCCCGCCCAAGTCG 1165269 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || || || || | | | | || || || |||||||||| || || Sbjct 1165270 AAGATCAGGACGTTGTGCTCGCCGCCCT---TCTTGTCCAGGCCATACGCAATCGCGGCG 1165326 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || || || ||||| | | ||||| | |||||||| || ||||| || Sbjct 1165327 GCCGTGGGCTCGTTGATAATGCGAAGCACATTCAAGCCAGCAATCGCGCCGGCATCCTTG 1165386 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT-CTGTTAC 282480 || || || | || || ||||| || || || || |||||||| ||||||| ||| || Sbjct 1165387 GTCGCCTGCCGCTGCGAGTCGTTGAAGTAGGCTGGCACAGTAATCACGGCATTCTGC-AC 1165445 Query 282481 TTCTTTTCCAATATAAGCGCTT--GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAA 282538 || ||||| | ||||| || || ||||| || | | | ||| || ||| Sbjct 1165446 CTCCACCCCAATGAA--CGCTTCCGCCACCTGCTTCATCTTGATCAGCACCATCGACGAA 1165503 Query 282539 ATTTGTTCTGGA--GAATATTGCTTGGATTCATT-TTGATATGATACTTCAAAATATGGT 282595 || | ||| || ||| | |||| || |||| | | || ||| | || Sbjct 1165504 ATCTCTTCCGGCTGGAACGT--CTTGCTCTCGCCCTTGAATTCA-ACCACAATCTGCGGC 1165560 Query 282596 TTATTACCAA---CATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTT 282652 || | || | | || || |||||||| | || || |||| |||| | Sbjct 1165561 TTGTCGCCCGGCCCGGCCACCACCTTGAATGGCCAGTGCTTGATGTCTGCCTGAATCATC 1165620 Query 282653 TGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTA 282712 |||| ||||| | | || || || || || || ||||| | ||| || | || || Sbjct 1165621 GGGTCGTTAAACTTGCGCCCGATCAACCGCTTCGCGTCAAACACAGTGTTCGACGGGTTC 1165680 Query 282713 ACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACA 282772 | || |||| | ||||| || ||||||||||| | || || || ||||| | || Sbjct 1165681 ATCGCGACTTGGTTCTTGGCCGCGTCTCCAATCAGCCGCTCCGTGTCGGTAAAGGCCACG 1165740 Query 282773 TATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGC 282832 || || || || ||||| || ||||| || |||||||| ||||| || | |||||| Sbjct 1165741 TACGACGGCGTCGTGCGGTTGCCTTGGTCGTTCGCAATGATTTCGACGCGGTCGTTTTGC 1165800 Query 282833 CATACACCTACACA 282846 || || ||||| || Sbjct 1165801 CACACGCCTACGCA 1165814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740606784932706