Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq62 82.4 1e-10 seq18 82.4 1e-10 seq14 82.4 1e-10 seq1 82.4 1e-10 >seq62 Length=376909 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| || | ||||| | |||| |||| |||||| |||| Sbjct 225239 TCCTCGTTAGTATAGTGGTGAGTATACCTGCCTGTCACGCGGGTGACCCGGGTTCAATTC 225180 Query 8718 CCCGACGAGGAGC 8730 || |||| ||||| Sbjct 225179 CCGGACGGGGAGC 225167 >seq18 Length=1130244 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 8652 CCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTT 8711 || || ||||||||||||||||||| ||||| || | ||||| | |||| |||| ||||| Sbjct 169618 CCGTAGTCCTCGTTAGTATAGTGGTCAGTATACCTGCCTGTCACGCGGGTGACCCGGGTT 169559 Query 8712 CGATTCCCCGACGAGGAG 8729 | |||||| |||| |||| Sbjct 169558 CAATTCCCGGACGGGGAG 169541 >seq14 Length=1185136 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| || | ||||| | |||| |||| |||||| |||| Sbjct 279174 TCCTCGTTAGTATAGTGGTCAGTATACCTGCCTGTCACGCGGGTGACCCGGGTTCAATTC 279233 Query 8718 CCCGACGAGGAGC 8730 || |||| ||||| Sbjct 279234 CCGGACGGGGAGC 279246 >seq1 Length=2817317 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| || | ||||| | |||| |||| |||||| |||| Sbjct 2787491 TCCTCGTTAGTATAGTGGTCAGTATACCTGCCTGTCACGCGGGTGACCCGGGTTCAATTC 2787550 Query 8718 CCCGACGAGGAGC 8730 || |||| ||||| Sbjct 2787551 CCGGACGGGGAGC 2787563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652840874770640