Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 201 1e-46 seq18 156 4e-33 seq76 154 1e-32 seq11 143 3e-29 seq27 118 1e-21 >seq1 Length=2817317 Score = 201 bits (222), Expect = 1e-46 Identities = 686/1049 (65%), Gaps = 24/1049 (2%) Strand=Plus/Plus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCG-CCATGCGTAGTCGTGCACCGACG 148011 ||| || || |||||||| |||||||| |||| || ||| ||||| ||||| ||||| Sbjct 1823994 GCGGAGGTAATACATGCCGGTCTTGAG-CCCACGCTTCCACGCGTAAAAGTGCATCGACG 1824052 Query 148012 ACATGAGCGTGT--ACG-TCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAA 148068 ||||| || | | | |||| | | || || | || ||||| ||| | Sbjct 1824053 ---TGAGCTTGCTGATGCTTGGGTCTGCGATGTGCACGTTCATGGATTGGCTTTGGCAGA 1824109 Query 148069 TGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCCG 148128 |||| ||||| ||||| || |||| || | | |||| ||| || ||||| | | Sbjct 1824110 TGAATGCGCCTCGGTCGGCAGCCAGGTCGAGCACGACCTTTTGCTTGATTTCCCACACAG 1824169 Query 148129 TCTTGTACAGCCGCTTGATATGATCGGGAAT-GCCGTCGATGCGCTGCACCGAGCCGCGG 148187 ||||||||| ||| | ||| | || || | || ||| | |||||| ||||||| Sbjct 1824170 TCTTGTACACTTCCTTCACATGCGCAGGGATCGACG-CGACGTTCTGCACACTGCCGCGG 1824228 Query 148188 T-GCGCAAAAATCTGATTGCGCATTTCGTCCGTGT---ATAGGTTGAGCTCGATCAGGTC 148243 | | |||| | |||| ||||| | |||||| || | ||| |||| || || || Sbjct 1824229 TCGTGCAAGA-TCTGGTTGCGGA---CGTCCGCGTTCCACAGGCCGAGCGAAATGAGCTC 1824284 Query 148244 ATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACAC 148303 | |||| |||| ||||| | | || || || || | || || || |||| Sbjct 1824285 CTTCATCAAGTACTTGTTCACAATCGTGAATTCACCTGCCAAGACACGGCGGCTGTACAT 1824344 Query 148304 GTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGT 148363 ||||||||| || || || | |||||||||||||| | ||||| ||||||| || || Sbjct 1824345 GTTGCTCGTGAAGGGCTCGATGGACTCGTTGTTGCCAAGGATCTGGGCGGTCGACGCGGT 1824404 Query 148364 GGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGC-TTCA 148422 ||||| || | ||||| ||| || | | ||| | | | ||| || |||| Sbjct 1824405 AGGCATCGGGGCCAACAGCAACGAATTCCTGATGCCGTGCTGAGCGA-CTTGAGCTTTCA 1824463 Query 148423 GAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGC 148482 | ||||| ||||| ||||||||||| || || |||||||| |||||||| | | | Sbjct 1824464 ACGTGGCCCAATCCCACAGCGGCGACGGGGTAACATTCCACATATCGTACTGGAACAGCC 1824523 Query 148483 CGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGC 148542 | ||| |||| || | ||||| ||| || || ||||| || ||||| Sbjct 1824524 CCTTGCTTACGGGCGACCCGTGGTACGTTTCGTAAGGCCCTTGCGCTTTTGCGAGTTCCA 1824583 Query 148543 AGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCG 148602 | | || | ||| ||| ||| |||||||| || || ||| | |||| | Sbjct 1824584 TGGAAGTTTCCATGGCGGCGTGGTAGATCGTCTCAAAGATCTGTTGGTTCAACAGCTTGG 1824643 Query 148603 C-CGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACG 148661 | | || ||| ||| | | || | | |||||| || || || || || || Sbjct 1824644 CTTGGGGCG-ACTCGAACGCGAATCCCATGAGGATAAACGCATCCGCCAGCCCTTGGACA 1824702 Query 148662 CCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGG 148721 || | ||| || || ||||| |||||| | |||||| |||| || |||| | Sbjct 1824703 CCAATGCCGATCGGGCGGTGCCGCATGTTGCTGTTGCGCGCTTCTTCGATGGGGTAGTAG 1824762 Query 148722 TTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAA 148780 ||| |||||||| |||| ||||| ||| | |||||||| | || || ||| Sbjct 1824763 TTGACGTCGATGACCTTGTTCAAG-TTGGTCGTGACCACCTTGGCGATCTTGTGCAAGTG 1824821 Query 148781 TTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCA 148840 || || ||| || | | | | | | | | ||||| || || | ||||| Sbjct 1824822 TTGGAAGTCGAACACGCCGTTCTCAACAAACTTGGAGAGCGCGATGGATGCCAAGTTGCA 1824881 Query 148841 CACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTT 148900 |||||| || || | ||||||| | ||| ||| ||||| ||||| |||| Sbjct 1824882 CACGGCGACTTCGTCTTTGCTCGTGTACTCGATGATTTCGCAGCACAAGTTGCTCGATTT 1824941 Query 148901 GATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTA 148960 |||| ||| | ||||| ||| ||| ||||| ||||||||| |||||||||| |||||| Sbjct 1824942 GATCGTGCCGAGGTTCTGTTGGTTGGACTTGCCGTTGCACGCATCCTTGTACAACATGTA 1825001 Query 148961 CGGTCCGCCAGTTTCCACCTGCGTTTCCA 148989 ||| ||| ||||| || |||| ||||| Sbjct 1825002 CGGGGTGCCTGTTTCTACTTGCGATTCCA 1825030 >seq18 Length=1130244 Score = 156 bits (172), Expect = 4e-33 Identities = 335/492 (68%), Gaps = 13/492 (3%) Strand=Plus/Plus Query 120353 TGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCA 120412 |||||||||||||||| ||||| |||||||| || ||||||| | ||| || ||| || Sbjct 426784 TGTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCA 426843 Query 120413 TAAACTCGAACGGG---TTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCA 120469 | | ||||||||| ||| |||| || || || || ||| | | |||| | Sbjct 426844 TCCAGTCGAACGGGTTCTTGGCCGCG-TACAG--CTTGGGGGCGCCGAGGGCTTCGAGGA 426900 Query 120470 GTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACG 120529 | || ||||| ||||||||||||||||||||| || ||||||||| | | | Sbjct 426901 GGCGATCCGCGCAGAACTCAATGTACTCGCACATGAGGGACGAGTTCATGCCAATGAGCT 426960 Query 120530 CCACCGGCA-ACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 |||| |||| | | || ||| ||||| ||||||||| | || || || || || Sbjct 426961 CCACGGGCAGGCTCTCAC-TGACAAACTGCTTCTCAATCGCGACGGCGTCGCCGACGATC 427019 Query 120589 GCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGC 120647 || | || ||| ||| || ||||| ||| || |||| ||| || |||||| Sbjct 427020 TCGTGGATGCGCTGGTCGGACAACTTGTTGACGA-GC---TTCGAGTACATCAAGCACGC 427075 Query 120648 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGG 120707 |||||| |||||| || |||||||| || || || ||||| || | || || || Sbjct 427076 AAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGAAGGACAAACCCGG 427135 Query 120708 CATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCC 120767 ||| | ||| | |||||| |||| |||| | || ||||| ||||| | ||| Sbjct 427136 CATTAGACCTCGCTTCTTGAGCCAGAAGATGGAGCAGAACGACCCCGAGAAGAAGATGCC 427195 Query 120768 CTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCA 120827 || || ||||||||| || || || || || | | || ||| ||||| ||| Sbjct 427196 TTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACGCTTATTGTCGCACCA 427255 Query 120828 CTTCATGGCCCA 120839 ||||| ||||| Sbjct 427256 CTTCAAAGCCCA 427267 >seq76 Length=128956 Score = 154 bits (170), Expect = 1e-32 Identities = 161/209 (77%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| ||||| |||||||| |||| || |||| | | | ||||| | Sbjct 44896 AAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTCAACGTGCGGCCA-TCCTCCAA 44954 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | ||||| || ||||| || ||||| || ||||||||||| || Sbjct 44955 CTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAAT 45014 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||||| | |||| || ||||| ||||||||||||| || | ||| ||||| Sbjct 45015 CTTCTGCTTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTTGCC 45074 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGG 133662 ||| || || || || || |||||||||| Sbjct 45075 GGTGAGGGTCTTGACAAAGATCTGCATGG 45103 >seq11 Length=1510989 Score = 143 bits (158), Expect = 3e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || || || ||||| |||| || |||| | | | || |||||||||||||| Sbjct 1070339 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCA-TCTTCGAGCTGCTTGCC 1070281 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || ||||||||||||||||| ||||||||| || Sbjct 1070280 CGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGTTT 1070221 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || ||| | ||||||||||| | |||| ||| || || |||| ||| Sbjct 1070220 GACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTCCCAGTCAAAGT 1070161 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 1070160 CTTGACGAAAATCTGCAT 1070143 >seq27 Length=843962 Score = 118 bits (130), Expect = 1e-21 Identities = 153/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || || || || ||||| |||| || |||| | | | || || | Sbjct 479960 AAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCA-TCTTCCAA 479902 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| || | ||||| || ||||| || || ||||||||||||||||| ||| Sbjct 479901 TTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGAT 479842 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||| | | || | || ||||| || ||||| || | |||| |||||| || Sbjct 479841 CTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTACC 479782 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGG 133662 |||| || || ||||| || ||||||| Sbjct 479781 CGTCAACGTCTTGACGAAGATTTGCATGG 479753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417893432440