Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq76 100 7e-16 seq27 96.9 8e-15 >seq76 Length=128956 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || || || | || ||||| || ||| Sbjct 45098 CAGATCTTTGTCAAGACCCTCACCGGCAAGACCATTACGCTCGACGTGGAGCCGTCCGAC 45039 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||||| |||||||| || || ||||| ||| ||||| ||| Sbjct 45038 TCGATTGACAATGTCAAGCAGAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAGCAA 44979 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| ||||| ||||| ||||||||||| ||||| | || ||| ||| ||||| || Sbjct 44978 CGACTCATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGCACGTTGAGCGACTACAATATC 44919 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||| || || || Sbjct 44918 CAGAAGGAGTCGACCCTGCA 44899 >seq27 Length=843962 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| ||| | || || ||||| ||||| ||||| |||||| || ||| | |||| Sbjct 479769 CAAGACGTTGACGGGTAAAACCATCACGTTGGATGTGGAACCATCCGACTCGATCGACAA 479828 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||||| || || || ||||| || || || ||| | || ||||| Sbjct 479829 CGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCAGCAACGCCTCATCTT 479888 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| ||||| ||||||||||| | || ||| ||| |||||| |||| || || || Sbjct 479889 TGCCGGCAAGCAATTGGAAGATGGCCGCACGTTGAGCGACTACAACATCCAAAAGGAATC 479948 Query 206364 TAC 206366 || Sbjct 479949 GAC 479951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181813516660001