Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq11 116 4e-21 seq27 105 6e-18 seq76 104 2e-17 seq1 96.9 3e-15 >seq11 Length=1510989 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||||| || | | || || ||||| |||||||||||||||| || Sbjct 1070364 ACGCAGGCGGAGAACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGT 1070305 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||||||||| || || | | |||| | ||||| || || || || ||||| Sbjct 1070304 GCGGCCATCTTCGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCC 1070245 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || |||||||| | | || | | || | |||||||| || | Sbjct 1070244 TTCCTTGTCTTGGATCTTTTGTTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAG 1070185 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || ||||||| ||| || | |||||||||||| Sbjct 1070184 CGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 1070143 >seq27 Length=843962 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | ||||| || | | | || || ||||| |||||||||||||||| || Sbjct 479976 ACGCAGGCGGAGCACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGT 479917 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | || || |||| | |||| || || || ||||| || || ||||| Sbjct 479916 GCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGGATGCC 479857 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || ||||| |||| | || | | |||| || ||||| || | Sbjct 479856 TTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAA 479797 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | |||||||| |||| || || | ||| || |||||| Sbjct 479796 CGTGATGGTTTTACCCGTCAACGTCTTGACGAAGATTTGCATG 479754 >seq76 Length=128956 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||| | ||||||||| | | | ||||| || || || ||||||||||||| || || Sbjct 44886 GCGAAGAACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTCAACGTGCGGCC 44945 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| || | ||| || |||| | |||| || || || ||||| ||||| || ||||| || Sbjct 44946 ATCCTCCAACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTT 45005 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || ||| || || || | | || | | |||| ||||||||| |||| ||| | Sbjct 45006 GTCCTGAATCTTCTGCTTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAAT 45065 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || || || || || | || ||||||||| Sbjct 45066 GGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 45102 >seq1 Length=2817317 Score = 96.9 bits (106), Expect = 3e-15 Identities = 342/524 (65%), Gaps = 8/524 (2%) Strand=Plus/Plus Query 146593 TAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATG 146652 ||||||||||| || ||||| |||| ||||| || | ||| ||||| || | | | Sbjct 1824001 TAATACATGCCGGTCTTGAGCCCACGCTTCCACGCGTAAAAGTGCATCGACGTGA-GCTT 1824059 Query 146653 GCGTACG-TCGGCTCCGCCACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTT 146711 || | | | || || || | | | || | ||||||||||| ||||| ||| Sbjct 1824060 GCTGATGCTTGGGTCTGCGATGTGCACGTTCATGGATTGGCTTTGGCAGATGAATGCGCC 1824119 Query 146712 GCGGTCGGCCGCCATCTCAATCATG-CGTTTTGTCTTCATTTCCCAAGCGGTTTTGTACA 146770 |||||||| |||| || | || | | ||||| ||| |||||||| | || ||||||| Sbjct 1824120 TCGGTCGGCAGCCAGGTCGAGCACGACCTTTTG-CTTGATTTCCCACACAGTCTTGTACA 1824178 Query 146771 GCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATAGAGCCCTTGT-GCGCAAAA 146829 |||| || | || || | | ||| || | | ||| || | |||| | Sbjct 1824179 CTTCCTTCACATGCGCAGGGATCGACGCGACGTTCTGCACACTGCCGCGGTCGTGCAAGA 1824238 Query 146830 ATAGTGTTTCGTATTTCGGGCGTGTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATAC 146889 | ||| || | || | | | ||| || |||||| || | || || ||| Sbjct 1824239 TCTG-GTTGCGGACGTCCGCGTTCCACAGGCCGAGCGAAATGAGCTCCTTCATCAAGTAC 1824297 Query 146890 TGATTGACCA-CTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAA 146948 | || || | | |||| || || |||| ||||| | | |||| ||||| ||||| Sbjct 1824298 TTGTTCACAATCGTGAAT-TCACCTGCCAAGACACGGCGGCTGTACATGTTGCTCGTGAA 1824356 Query 146949 AGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGC 147008 ||||| | ||||| || ||||| | || ||||| || | ||||||||||| || Sbjct 1824357 GGGCTCGATGGACTCGTTGTTGCCAAGGATCTGGGCGGTCGACGCGGTAGGCATCGGGGC 1824416 Query 147009 CACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTC 147068 || || ||| ||||| | | |||| | | || | | ||||| || ||| || Sbjct 1824417 CAACAGCAACGAATTCCTGATGCCGTGCTGAGCGACTTGAGCTTTCAACGTGGCCCAATC 1824476 Query 147069 CCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCA 147112 ||||| || ||| || || || |||||||| |||||||||| || Sbjct 1824477 CCACAGCGGCGACGGGGTAACATTCCACATATCGTACTGGAACA 1824520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608334375160