Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq18 257 2e-62 seq1 165 1e-34 seq23 116 5e-20 seq16 114 2e-19 seq37 111 2e-18 seq10 104 3e-16 >seq18 Length=1130244 Score = 257 bits (284), Expect = 2e-62 Identities = 419/588 (71%), Gaps = 18/588 (3%) Strand=Plus/Minus Query 1455731 GATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGA--TATGGGAAATGT 1455788 || || |||||| | || || || ||||| |||| || || || | ||||| |||| Sbjct 427669 GAAAATCCGAACAGGTTCGTGCTCTTCCCGATCCAACAC--GCCGACGTGTGGGAGATGT 427612 Query 1455789 ACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGC-CGA-CA 1455846 || |||||||| || || ||| ||||| || || ||| | ||| | || || ||| || Sbjct 427611 AC-AAAAAGGCGGAAGCGAGCTTCTGGACAGCGGAAGAGCTAGACTT-GGTGCACGATCA 427554 Query 1455847 CGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCT 1455906 | | ||||||| ||| | |||| |||| || ||||||| ||| || || || | Sbjct 427553 ACG-CGACTGGGTCAAGCTTACCGACAACGAACGTTTCTTCATCACGCATGTGCTGGCGT 427495 Query 1455907 TTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAG 1455966 | ||| ||||| || || || |||||| ||| ||||| || ||||| || || Sbjct 427494 TCTTT-GCCGCGAGTGACGGGATCGTGAACGAAAACCTCGCGATGAACTTTAGCAATGAA 427436 Query 1455967 GTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCAC 1456026 || ||| |||| || || || | || |||||||||||||| ||||| || ||||| ||| Sbjct 427435 GTACAAGTGCCTGAAGCCCGGTGCTTCTACGGGTTCCAGATTGCCATTGAGAACATTCAC 427376 Query 1456027 TCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCAC 1456086 |||||| ||||||||||| |||||||| ||| ||||||| | || ||||||| Sbjct 427375 TCTGAAGTGTACTCGCTCCTCATCGACACGTACATCAAGGATGCCACGGAAAAGGACCGG 427316 Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGT--GAGGAAAAAGGCCGACTGGGCGATGA 1456144 || | || ||||| |||||| | || | || || | ||| ||| |||||| ||| Sbjct 427315 GTCCTGCGTGCCATTGACACGATCCCCTGTGTCCGACGCAAA--GCCACCTGGGCTTTGA 427258 Query 1456145 AGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GT 1456203 ||||| | |||| | || | || || || || |||| | ||||||||| || Sbjct 427257 AGTGGTGCGACAATAA--GCGTGCTGCCTACGCTGAACGTATCGTTGCCTTTGCCGCTGT 427200 Query 1456204 CGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCT 1456263 ||| |||||||| |||||||| |||||| ||||||| |||||||||||||| || || Sbjct 427199 CGAAGGCATCTTCTTCTCGGGGTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGTCT 427140 Query 1456264 CATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 ||||| ||| || | ||| |||||| | || ||||||||||| Sbjct 427139 AATGCCGGGT-TTGTCCTTCTCGAACGAACTCATTTCTCGCGACGAAG 427093 Score = 226 bits (250), Expect = 4e-53 Identities = 246/317 (78%), Gaps = 12/317 (4%) Strand=Plus/Minus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTC-GA 1456505 |||| ||||||| |||||||| || || | ||| ||| ||||||||||||| ||| || Sbjct 427094 AGGTCTGCACTGCGACTTTGCGTGCTTGATGTACTCGAAGCTCGTCAACAAGTTGTCCGA 427035 Query 1456506 CCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 || || ||| | ||||| ||| ||| ||||||| ||| ||||| |||||||||| | Sbjct 427034 CCAGCGCATCCACG-AGATCGTCGGCGACGCCGTCGCGATTGAGAAGCAGTTTGTCAGTG 426976 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 || ||||| |||| |||||| ||||||||| | || ||||||||| |||||||||| Sbjct 426975 AGAGCCTGCCCGTGGAGCTCATTGGCATGAACTCGTCC-CTCATGTGCGAGTACATTGAG 426917 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCA 1456685 || || ||| || ||||| |||| || |||||| || |||| ||| |||||| Sbjct 426916 TTCTG-CGCGGATCGCCTCCTCGAAGCCCTCGGC-GCCCCCAAGCTGTACG---CGGCCA 426862 Query 1456686 A---CCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGC 1456742 | ||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 426861 AGAACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTTTTCGAGA 426802 Query 1456743 GCCGCGT-GGCGAGTAC 1456758 ||||| ||||||||| Sbjct 426801 AGCGCGTCGGCGAGTAC 426785 >seq1 Length=2817317 Score = 165 bits (182), Expect = 1e-34 Identities = 217/301 (72%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 259881 CCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATG 259940 ||||||||||| |||||| || || || ||| || || |||||| | || |||| Sbjct 1825690 CCACCTACGAGTACATGTCCCAATTGTACTTTACCCACGCAACACCCACGTTGTTCAATG 1825631 Query 259941 CCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGA 260000 |||||||||||||||| || |||||||||||| || || |||||| | ||| |||| Sbjct 1825630 CCGGCACGCCGCGCCCTCAACTCTCGTCGTGCTTTTTGCTGTCCATGAAAGACGACTCGA 1825571 Query 260001 TCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCA 260060 | || ||||| || ||||| | || | |||||| ||| |||||| ||| || || | Sbjct 1825570 TTGAAGGCATTTACGACACATTGAAAAACTGCGCGTGCATTTCCAAGTGGGCTGGTGGAA 1825511 Query 260061 TCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCC 260120 ||||| | | ||||| | |||||| || | |||| | || || ||||| Sbjct 1825510 TCGGTGTGAACATCCACAACATCCGCGCCACGAACAGCTACATTCGAGGAACGAACGGGT 1825451 Query 260121 AGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACC 260180 || ||||| | | |||||||||||||| || ||||||||||| || || ||||||| Sbjct 1825450 CTTCGAACGGGATCATTCCCATGCTTCGCGTGTTCAACGACACGGCCCGTTATGTCGACC 1825391 Query 260181 A 260181 | Sbjct 1825390 A 1825390 >seq23 Length=920215 Score = 116 bits (128), Expect = 5e-20 Identities = 177/248 (71%), Gaps = 12/248 (5%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| ||| |||||||||||| | ||||| ||||||||| ||||| || Sbjct 135070 TCGTACTCGACCTACATCTACAAGGTGTTGAAGCAAGTGCACCCCGAAACCGG-----CA 135016 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| |||||| |||||||||||||| ||||||| || | || |||||| Sbjct 135015 TC-TCCAAGCGCGGCATGTCCATCATGAACTCGTTCATCAACGATATCTTTGAACGCATC 134957 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGA--TCGGCA-CGCGC 725072 | | || || || || |||| ||||||| || ||| | | | | ||| Sbjct 134956 GCGTCGGAAGCTGGCAAGCTCAGCCGCTACAACAAG---AAGTCGACTTTGTCGTCTCGC 134900 Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 || || || ||||||||||| || || | | |||||| |||||| ||||||||| || Sbjct 134899 GAAATTCAAACCGCCGTGCGTCTCATGCTTCCCGGCGAGTTGGCCAAGCACGCCGTGTCG 134840 Query 725133 GAGGGCAC 725140 || ||||| Sbjct 134839 GAAGGCAC 134832 >seq16 Length=1248631 Score = 114 bits (126), Expect = 2e-19 Identities = 173/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| ||| || ||||| ||| | ||||| ||||||||| ||||| | | Sbjct 62325 TCGTACTCGACCTACATTTACAAAGTGTTGAAGCAAGTGCACCCCGAAACCGGT-----A 62379 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| ||||||||||||||||||||| |||||||||| | || |||||| Sbjct 62380 TC-TCCAAGCGCGGCATGTCGATCATGAACTCGTTCATCAACGACATCTTTGAACGCATC 62438 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | || || || || |||| ||||||| ||| | | ||||| Sbjct 62439 GCGTCGGAAGCTGGCAAGCTCAGCCGCTACAACAAGAAGTCCACTTTGTCGTCCCGCGAA 62498 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||| |||||||||||||| || | | || ||| |||| | ||||||||| || || Sbjct 62499 ATCCAAACCGCCGTGCGCCTCATGCTTCCTGGTGAATTGGCTAAGCACGCCGTGTCTGAA 62558 Query 725136 GGCAC 725140 ||||| Sbjct 62559 GGCAC 62563 >seq37 Length=488699 Score = 111 bits (122), Expect = 2e-18 Identities = 282/425 (66%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 2133412 TGCTGGTCTGCCTGGGCGAGGATGTGACGCGCGAGGGCCTCCTGGACACACCCATGCGCG 2133471 |||||| ||| ||||||||||||| || ||||| || ||||| | || ||||||||| Sbjct 450258 TGCTGGAATGCATGGGCGAGGATGTCACACGCGAAGGTCTCCTCAAGACCCCCATGCGCA 450317 Query 2133472 TGGCCAAGGCCATGGTGGAGCGCACGCGCGGCCAT-CGCATGACCCTGGCCGACGCCGTC 2133530 |||| ||||| | || | |||| || | | || || | || | |||| | | Sbjct 450318 TGGCAAAGGCTCTCATGTACTGCACCAAGGGGTACGCCCAAGAAC-TGTCGGACGTCCTG 450376 Query 2133531 GGCGGCGCCCTCTTT---GACGAGGCGTCGGACGAGATGGTGACGGTGCGCGATATTGAC 2133587 || ||| | || || || ||||| ||||| | || ||||| ||||| Sbjct 450377 AACGAAGCCGTATTCACGGAAGACTACTCGGAA---ATGGTCATTGTCCGCGACATTGAG 450433 Query 2133588 TTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTAC 2133647 | | ||| |||| ||||||||| | | || || | || || | ||| | || ||| Sbjct 450434 CTGTACTCGTTGTGTGAGCACCACGTTGTCCCATTCGTTGGTAAAGTTCACATCGGGTAC 450493 Query 2133648 CTGCCCGCGGGCAAGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTTTTCC 2133707 | || ||||| || |||| |||||||| || |||||||| ||| ||||| | Sbjct 450494 ATTCCAAACGGCAAAGTCCTCGGGCTGAGCAAACTCGCGCGCATCTCGGACGTGTTTGCG 450553 Query 2133708 GACCGCTTCCAAGTACAGGAGGCACTCACGCGCCAGATCGCCGAGAGCGTGAGCCAGGTT 2133767 ||| | ||||| || ||| || || | | |||||| | | ||| || | | Sbjct 450554 CGCCGACTACAAGTGCAAGAGCGCCTGACAAACGAAATCGCCCAAGGGTTGATGCAAGCT 450613 Query 2133768 ACGGGCGCGCGCGGCGTCGGCGTCGTCCTCGAGGGCCTGCACATGTGCGTGTGTATGCGC 2133827 || |||| || |||||||||||| |||| | | |||||||||| |||| ||||| Sbjct 450614 GTCGGTGCGCTGGGTGTCGGCGTCGTCATCGAAGCCACGCACATGTGCATGTGCATGCGA 450673 Query 2133828 GGCGT 2133832 || || Sbjct 450674 GGTGT 450678 >seq10 Length=1522286 Score = 104 bits (114), Expect = 3e-16 Identities = 173/247 (70%), Gaps = 10/247 (4%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| ||| |||||||||||| | ||||| || ||||| ||||| | | Sbjct 522985 TCGTACTCGACCTACATCTACAAGGTGTTGAAGCAAGTTCACCCTGAAACCGGT-----A 522931 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 | |||||| |||||| || ||||||||||| ||||||| || |||| ||||| Sbjct 522930 T-CTCCAAGCGCGGCATGTCCATTATGAACTCGTTCATCAACGATATCTTCGAACGCATT 522872 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG--CGCAACACGATCGGCACGCGCG 725073 | | || ||||| || |||| ||||||| | || ||| | |||| Sbjct 522871 GCGTCGGAAGCCGGCAAGTTGAGCCGCTACAACAAGAAGTCTACTTTGTCG--TCCCGCG 522814 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 | ||||| ||||| |||||||| || | | || |||||||||| ||| ||||| || | Sbjct 522813 AAATCCAAACCGCAGTGCGCCTTATGCTTCCTGGTGAACTGGCCAAGCATGCCGTATCTG 522754 Query 725134 AGGGCAC 725140 | ||||| Sbjct 522753 AAGGCAC 522747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177764806665922