Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq11 165 8e-36 seq27 127 2e-24 seq76 118 1e-21 >seq11 Length=1510989 Score = 165 bits (182), Expect = 8e-36 Identities = 163/208 (78%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTGAGAGTCGTCGAGCT 134568 ||| | ||| ||||||||||| ||||||||||||| ||||| || | || ||||||| Sbjct 1070346 GTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACG-TGCGGCCATCTTCGAGCT 1070288 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 | ||||| ||||| ||||| |||||||| || ||||| |||||||| || ||||| || | Sbjct 1070287 GCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCT 1070228 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 |||||||||| ||| | | ||| || | |||||||| || || ||||| || || | Sbjct 1070227 TTTGTTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTCCCAG 1070168 Query 134689 TTAAAGTTTTAACGAAAATTTGCATTTT 134716 | ||||| || |||||||| ||||| || Sbjct 1070167 TCAAAGTCTTGACGAAAATCTGCATATT 1070140 >seq27 Length=843962 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || || | ||| | ||| | || ||||||||||| ||||||||||||| ||||| || | Sbjct 479972 AGGCGGAGCACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACG-TGCG 479914 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || | || ||||| ||||| || | || |||||||| || || |||||||| Sbjct 479913 GCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGGATGCCTTC 479854 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || ||||| || || ||| | | |||||| | |||||| || | || Sbjct 479853 CTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGT 479794 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||||| || || || || ||||| |||||||| Sbjct 479793 GATGGTTTTACCCGTCAACGTCTTGACGAAGATTTGCAT 479755 >seq76 Length=128956 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || || ||||| || || |||||||||| ||||| || | || || | ||| Sbjct 44899 TGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTCAACG-TGCGGCCATCCTCCAACTG 44957 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| ||||| || | || |||||||| || || || ||||| || || ||||| || Sbjct 44958 CTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTT 45017 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || ||||| ||| | | |||||||| ||||||||||| |||||||| || ||||| Sbjct 45018 CTGCTTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTTGCCGGT 45077 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || || || || ||||| Sbjct 45078 GAGGGTCTTGACAAAGATCTGCAT 45101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505395361292120