Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq18 149 9e-31 >seq18 Length=1130244 Score = 149 bits (164), Expect = 9e-31 Identities = 414/627 (66%), Gaps = 11/627 (2%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| ||||| || ||||| || || || || || || | | ||| | |||||| || | Sbjct 427063 ACATCAAGCACGCAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGA 427122 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCA 39727 | | | || ||||||||||| ||||| |||||||| || |||| |||| || || || Sbjct 427123 AGGACAAACCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGACCCC 427181 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTA--- 39784 || |||||||||||||| || || ||||| ||||| | | || |||| | | Sbjct 427182 GAGAAGAAGATGCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACGC 427241 Query 39785 TCATTATGTATCCACTTCTGTGCCCAATCAGCTTT-CTTCTTTACACAAGGCATTGTTTC 39843 | ||| | ||||||| ||||| ||||| | || ||||| || || || || Sbjct 427242 TTATTGTCGCACCACTTCAAAGCCCAGGTGGCTTTGCGTC-GGACACAGGGGATCGTGTC 427300 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 || ||| | || | ||||| ||| || | || || || || | || Sbjct 427301 AATGGCACGCAGGACCCGGTCCTTTTCCGTGGCATCCTTGATGTACGTGTCGATGAGGAG 427360 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 |||| ||| || || ||||| ||||| || ||||| || ||||| || || | || Sbjct 427361 CGAGTACACTTCAGAGTGAATGTTCTCAATGGCAATCTGGAACCCGTAGAAGCACCGGGC 427420 Query 39964 TTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATC 40023 ||||| | |||||| || | ||| | ||| | ||||| ||||| || || || Sbjct 427421 TTCAGGCACTTGTACTTCATTGCTAAAGTTCATCGCGAGGTTTTCGTTCACGATCCCGTC 427480 Query 40024 ACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTT 40083 ||| |||||||| || |||| ||||| | || || | ||| | | || | || Sbjct 427481 ACTCGCGGCAAAGAACGCCAGCACATGCGTGATGAAGAAACGTTCGTTGTCGGTAAGCTT 427540 Query 40084 ATTCCAGT--CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCC 40141 ||||| | ||| ||| | | |||| ||||| |||||||| || ||| Sbjct 427541 GACCCAGTCGCGTTG--ATCGTGCACCAAGTCTAGCTCTTCCGCTGTCCAGAAGCTCGCT 427598 Query 40142 TCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTA 40201 || |||||||||||||| | ||| | || | ||| || || || | || || || Sbjct 427599 TCCGCCTTTTTGTACATCTCCCACACGTCGGCGTGTTGGATCGGGAAGAGCACGAACCTG 427658 Query 40202 TTTGGATTTTTTGCAAGGATGGGTTCC 40228 || ||||||| |||||||| || ||| Sbjct 427659 TTCGGATTTTCTGCAAGGAACGGCTCC 427685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904669960840